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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTTATCATGGTGATACTTCAGCAACTTTCTTCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGgtattatgttgaacctaaacagttccgtttccgtcgtctagaaaaatcatgtttttgttatagtttgatgagctctatacttggaatgtgctctag

Basic information

species Arabidopsis thaliana
transcript AT4G37040.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86077188|gb|DR372945.1|DR372945
EST:     CAACTTTCTTCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAG                         GTGACGAAAGAGTCTCTCGACAAAGCAATATCAATATGTGGTCCCGGAGTT
genomic: CAACTTTCTTCTGTGGAAATGTTGACGAGAAGGCTAAAAAGCTAGTCGAGgtattatgtt ... tgtgctctagGTGACGAAAGAGTCTCTCGACAAAGCAATATCAATATGTGGTCCCGGAGTT
EST: gi|125252446|gb|EL266531.1|EL266531
EST:     TAAAAAGACTAGTCGAG                         GTGACGAAAGAGTCTCTCGACAAAGCAATATCAATATGTGGTCCCGGAGT
genomic: TAAAAAG-CTAGTCGAGgtattatgtt ... tgtgctctagGTGACGAAAGAGTCTCTCGACAAAGCAATATCAATATGTGGTCCCGGAGT