1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CTTACCAGACCAGACTGTTTCAGCTGAACCTGAGGTAGCAGAAGAAGGTGAAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgcttcctacgttaatatgcttgaccatgtgagatttatcttgcgtgttgcttgaggaattagatgttccaagttttgttttgttgaactcgttattggatttttattcgttgattcattag
species | Arabidopsis thaliana |
transcript | AT4G35450.5 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCTEST: gi|125119317|gb|EL167598.1|EL167598
genomic: AGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgc ... gattcattagGGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCT
EST: AAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGAEST: gi|86079639|gb|DR375396.1|DR375396
genomic: AAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgc ... gattcattagGGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGA
EST: AAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCTEST: gi|124770300|gb|EH860430.1|EH860430
genomic: AAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgc ... gattcattagGGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCT
EST: TCTTGGTGATGTTGAG GGTTTGAAGGCTGTCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCEST: gi|125015034|gb|EL087303.1|EL087303
genomic: TCTTGGTGATGTTGAGgttagactgc ... gattcattagGGTTTGAAAGCTG-CCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTC
EST: AAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAG GGTTTGAAAGCTGCCTTGGCATEST: gi|125176177|gb|EL195668.1|EL195668
genomic: AAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgc ... gattcattagGGTTTGAAAGCTGCCTTGGCAT
EST: AGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTEST: gi|86081367|gb|DR377124.1|DR377124
genomic: AGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgc ... gattcattagGGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATT
EST: AAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAG GGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCT
genomic: AAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgc ... gattcattagGGTTTGAAAGCTGCCTTGGCATCTGGTGGTAACAAAGATGAAGAAGATTCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTACCAGACCAGACTGTTTCAGCTGAACCTGAGGTAGCAGAAGAAGGTGAAGAAGAAGAGTCTATTGTTCACCAAACTGCCAGTCTTGGTGATGTTGAGgttagactgcttcctacgttaatatgcttgaccatgtgagatttatcttgcgtgttgcttgaggaattagatgttccaagttttgttttgttgaactcgttattggatttttattcgttgattcattag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG