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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCGAACTCGCCTCTCAATGTTTACAATATGAGCCTCGAGAGAGACCAAATACAAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACgtaagctagacatcttgaaactcccaatcttgaccgagttcttaaatttcgtcttttaagtgttaaatattttgggtacag

Basic information

species Arabidopsis thaliana
transcript AT4G35230.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35230.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv03s0038g03270.t01 (Vitis vinifera), 5'ss of exon 6
GGTCGAACTCGCCTCTCAATGTTTACAATATGAGCCTCGAGAGAGACCAAATACAAAAGATCTTGTTGCAACACTTGCACCATTGCAAACTAAATCAGACgtaag----ctagac--atcttgaa--actcccaatcttga--ccgagttcttaaatttcgtcttttaa----gtgttaaat--attttgggtacag---
 || |  || |||||||||||||| |||||||| ||| ||||| | || |||||||| || ||||||||||||||||| ||| || |||| ||| | || |||||    ||   |   ||||  |  | |  || |  | |  ||    |||    || | | |||||     ||| | |||  ||| |    | |    
TGTTGGTCTTGCCTCTCAATGTTTGCAATATGAACCTAGAGAGCGGCCTAATACAAAGGACCTTGTTGCAACACTTGCCCCACTGAAAACCAAACCTGATgtaaggaacctgtgcttgtctttgactatttgcatttgtaaatcctcaatctatgcttccttgttttatccttgtgctcaattaattataaaaatatttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164217781|gb|ES089631.1|ES089631
EST:     GCAACACTTGCACCATTGCAAACTAAATCAGAC                         GTTCCATCTTATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCG
genomic: GCAACACTTGCACCATTGCAAACTAAATCAGACgtaagctaga ... ttgggtacagGTTCCATCTTATGTGATGCTTGGAATAAAGAAGCAAGAGGAGGCACCTTCG