Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttttcttagctcaactcttaatcgcctgattatcgggggttttctgttttggggaactcttctgatattttgatgactgagtctcgtacag

Basic information

species Arabidopsis thaliana
transcript AT4G35020.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G35020.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os02g58730.2 (Oryza sativa), 5'ss of exon 4
TGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttttcttagctcaactcttaatcgcctgattatcgggggttttctgttttggggaactc--ttctgatattttgatgactgagtctcgtacag-----
||| | |||||| | || ||||||||||||||||| || || || |||||||||||||||||||||  |   || |    ||     | ||  |   ||  |     |  |    | | | |  ||| |    | | ||||||| |   |    |  |   |||     
TGGATACCTGAATTAAGGCATTATGCTCCTGGTGTGCCAATAATTCTCGTTGGAACAAAGCTTGgtatgcccttccaactcttgttgcatag-catttg--tgcaaagcatcacatatct-gtagaattaagctattatattttcactcccacttacca-gcagcttgg

upper sequence: AT4G35020.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G375002_T02 (Zea mays), 5'ss of exon 3
------------------------------------TGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttttcttagctcaactcttaatcgcctgattatcgggggttttctgttttggggaactcttctgatattttgatgactgagtctcgtacag-----
                                    |||||||||||| | || || ||||||||||| || ||||| ||||| ||||| ||||| ||||||  | | ||  ||   ||| ||||  |||  | |  |||   |    | | |  ||||       |||| ||   |||     |   |  |  | |      
TTCTTGCATATTACCTGTGCATGTCGTTTTTTCCAGTGGGTTCCTGAATTAAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctcttcattc-ttcacctct--atctgcagcatattatgttcctccagaattggcctttcattctcattcgttgccagttacattgccaaaattatct

upper sequence: AT4G35020.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G375002_T03 (Zea mays), 5'ss of exon 4
TGGGTTCCTGAACTGAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttttcttagctcaactcttaatcgcctgattatcgggggttttctgttttggggaactcttctgatattttgatgactgagtctcgtacag-----
|||||||||||| | || || ||||||||||| || ||||| ||||| ||||| ||||| ||||||  | | ||  ||   ||| ||||  |||  | |  |||   |    | | |  ||||       |||| ||   |||     |   |  |  | |      
TGGGTTCCTGAATTAAGGCACTATGCTCCTGGCGTGCCCATAATCCTTGTTGGGACAAAACTTGgtatgctcttcattc-ttcacctct--atctgcagcatattatgttcctccagaattggcctttcattctcattcgttgccagttacattgccaaaattatct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86021225|gb|DR316971.1|DR316971
EST:     GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTG                         ATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTS-TGTGCCTA
genomic: GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttt ... tctcgtacagATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTA
EST: gi|86021224|gb|DR316970.1|DR316970
EST:     GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTG                         ATCTTCGAGATGATAAGCAATTCTTTTGCCGAGCACCCTGG-GTSTGTGCC
genomic: GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttt ... tctcgtacagATCTTCGAGATGATAAGCAATTCTTT-GCCGAGCACCCTGGTGC-TGTGCC
EST: gi|86021223|gb|DR316969.1|DR316969
EST:     GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTG                         ATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGSTGTGCCTA
genomic: GAGACATTATGCTCCTGGTGTTCCCATCATCCTCGTTGGAACAAAGCTTGgttggttttt ... tctcgtacagATCTTCGAGATGATAAGCAATTCTTTGCCGAGCACCCTGGTGCTGTGCCTA