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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGTTCAATGAATCTGCACTAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCCAAAACATCACAGGCTTTATGgtaattgtagtgtttgtgttgtgttctcacatttggctatataagagtgtctctatctatcttacttgctccgtttttgcttatag

Basic information

species Arabidopsis thaliana
transcript AT4G34030.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G14860.1 (Glycine max), 5'ss of exon 5
ACTGTTCAATGAATCTGCACTAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCCAAAACATCACAGGCTTTATGgta--attgtagtgtttgtgttg--tgttctcac-atttggctatataagagtgt-ctcta---tctatcttacttgctccgtttttgcttatag-----
  | ||||||||||||||||| ||||| || || ||||| ||||||||  |||||||||| |||||  | || ||||| || |||||||| || || ||||||  | | ||   | | | ||   |  ||| |  | |  ||| | |   | | |  ||||   |||   |   ||| | | | ||| |||         
TTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaatttaacttatttcttagttactctgattactatgctttgtgtcattatattctaacttctgagtagattgattcctctttccttcagaacatc

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G33620.1 (Glycine max), 5'ss of exon 5
ACTGTTCAATGAATCTGCACTAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCCAAAACATCACAGGCTTTATGgta--attgtagtgtttgtgttg--tgttctcac-atttggctatataagagtgt-ctcta---tctatcttacttgctccgtttttgctt-atag----
  | ||||||||||||||||| ||||| || || ||||| ||||||||  |||||||||| |||||  | || ||||| || |||||||| || || ||||||  | | ||   | | | ||   || ||| |  | |  ||| | ||  | | |  ||||   |||   |   ||| | | | ||| ||| ||      
TTTATTCAATGAATCTGCACTGAAAGGGGCCCATTTCATTGAATTATGCACTCAACGTAACATTCCCTTGGTCTTCCTTCAGAACATCACTGGATTCATGgtatgaatttaacttatttcttagttgctctgattactatgctttgtatcattatattctaacttctgagtagattgattcctctttccttcattttata

upper sequence: AT4G34030.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv03s0063g00290.t01 (Vitis vinifera), 5'ss of exon 6
ACTGTTCAATGAATCTGCACTAAAAGGAGCTCACTTCATCGAATTATGTTCTCAACGTAAAATTCCTCTTGTTTTCCTCCAAAACATCACAGGCTTTATGgtaattgtagtgtttgtgttgtgttctcacatttggctatataagagtgtctctatctatcttac-ttgctccgtttttgcttatag------------------
| | || ||||||||||| |||||||| || || ||||| ||| ||||| ||||||| || |||||| | || || || || |||||||| || |||||||||  |||  | |     |    |  || ||||   ||||  | ||   | |  | |  ||||       | | ||   |   |                     
ATTATTTAATGAATCTGCTCTAAAAGGGGCCCATTTCATTGAAATATGTACTCAACGCAACATTCCTTTGGTGTTTCTTCAGAACATCACTGGATTTATGgta--tgtgatctcaacttc---tcttcccattactctattgatgaagttgtgcaccattcttgtgccattacattcaagaagaggaatgcattaatgtggaaaa