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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGATCTGTGTGTGAGCGGGCTCATCTACTCCGTATCAAATACTATGGGAGCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAGgtaccattcattttaagtgtgtttttttatctcttaatctgtagcacaccattctccttttagccaatggtgaggaaactgaactcctgatggaaccagg...

Basic information

species Arabidopsis thaliana
transcript AT4G33240.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G33240.3 (Arabidopsis thaliana), 5'ss of exon 7
lower sequence: Vv11s0016g00360.t01 (Vitis vinifera), 5'ss of exon 8
AGGATCTGTGTGTGAGCGGGCTCATCTACTCCGTATCAAATACTATGGGAGCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAGgtaccatt-----cattttaagtgtgtttttttatctcttaatctgt-agcacaccattctccttttagccaatggtgaggaaactgaactc-ctgatggaaccagg
| |  | |||||||||||||| |||||  | || || ||||| ||||| |||| ||| ||||||||||| ||||||||| | ||  |  | ||||||||||||   ||     | | ||     || || | ||  ||||    ||| | | |  ||  | | ||||  |      |||  | ||| |   |  | ||         
AAGTACCGTGTGTGAGCGGGCACATCTCTTTCGAATAAAATATTATGGAAGCTCTGATAAGCCTTTAGGGCGGTTTTTACGAGAGCAGTTATTTGATCAGgtattttttttctcttcttttacatgattatatacttctttccttgtcaaccctacaagcacatttttac----attgactagactcattccatttattag------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069887|gb|DR365644.1|DR365644
EST:     GCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAG                         GATCAGTGCTGCCCGTCATGTACGATGCCAGCGGAAGCACACATTCATTGT
genomic: GCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAGgtaccattca ... tcctgttcagGATCAGTGCTGCCCGTCATGTACGATGCCAGCGGAAGCACACATTCATTGT
EST: gi|86069888|gb|DR365645.1|DR365645
EST:     GCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAG                         GATCAGTGCTGCCCGTCATGTACGATGCCAGCGGAAGCACACATTCATTGT
genomic: GCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAGgtaccattca ... tcctgttcagGATCAGTGCTGCCCGTCATGTACGATGCCAGCGGAAGCACACATTCATTGT
EST: gi|86069889|gb|DR365646.1|DR365646
EST:     GCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAG                         GATCAGTGCTGCCCGTCATGTACGATGCCAGCGGAAGCACACATTCATTGT
genomic: GCTTTGACAAGCCTTTAGGACGGTTTTTAAGGGATAATCTCTTTGATCAGgtaccattca ... tcctgttcagGATCAGTGCTGCCCGTCATGTACGATGCCAGCGGAAGCACACATTCATTGT