Sequence
atgc intronic sequence ATGC exonic sequenceTAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAGgttagcattctggttcactagattgtcctctcgccacaaaaataattacatgtaatcatatatctgctttcatatggtgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G32330.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G32330.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA04G07100.1 (Glycine max), 5'ss of exon 6
TAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAGgttagca-ttctggttcactagattgtcctct-cgccacaaaaataattacatgtaatcatatatctgctttcatatggtgcag-------------
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---TCCTACCGCAGAAGATGCCAAACCTCGCAGGGTGGGAGCACTTCCAAAATATGGATTCAGTTTCAAGTGTGATGAGCGAGCTGAGAGAAGAAAAGAGgtaaataattattacttgctt--ctgccttttgtgttacatgag-ggtttcttttggataaac-tcagttttaaaaaaatgttattttggtggccag
upper sequence: AT4G32330.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA17G31990.1 (Glycine max), 5'ss of exon 6
TAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAGgttagcattctggttcactagattgtcctctcgccacaaaaataattacatgtaatc---atatatctgctttcatatggtgcag-------------------
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AAGTTCCAACACAGAAGATGCCAAACCTCAAAGGGTGGGAACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAACGAGCTGAGAGAAGGAGAGAGgtgaataatc-agtacattcttatttccttgtactttgtcattgtccaagtttcttttgaataagtttgtacataaaaaattcaattgatattttggtgagcag
upper sequence: AT4G32330.3 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G14400.1 (Glycine max), 5'ss of exon 6
TAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAGgttagcattctg-gttcactagattgtcc---tctcgccacaaaaataattacatgtaatcatatatctgctttcatatggtgcag-------------------
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AAGTACCAACACAGACGATTCCAAACCTCAAAGGGTGGGGACACTTCCAAATTATGGATTCAGTTTTAAGTGTGGTGAAAGAGCTGAGAGGAGAAAAGAGgtgaataattagtgcacacttatttccttgtactttgtcattgtccaggtttcttttgaataatcttgtacttaaaaaaattacaattggtattttggtgagcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125262350|gb|EL276435.1|EL276435EST: TCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAG TTCTATGTTAAGCTTGAGGAGAAGACTCATGCAAAAGAAGAGGAAATTAA
genomic: TCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAGgttagcattc ... tatggtgcagTTCTATGTTAAGCTTGAGGAGAAGACTCATGCAAAAGAAGAGGAAATTAA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TAGTCCGAAAGCAGACGATGGAAAACCTCGTAAAGTTGGTGCACTTCCAAATTATGGATTCAGTTTCAAATGTGACCAACGGGCTGAAAAGAGAAAAGAGgttagcattctggttcactagattgtcctctcgccacaaaaataattacatgtaatcatatatctgctttcatatggtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA