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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTACGGAAGCCAAGGGAGTACTAAGCTGCGTAAAGGCGTTAAATTTCCCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAGgtataaagccgaagcagaactgtctatgtttcacatttctcttactctctatgtgatatccctctgttgtgaactagtcaaatttcttcttgtag

Basic information

species Arabidopsis thaliana
transcript AT4G30890.2
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124997834|gb|EL070103.1|EL070103
EST:     CCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAG                         AGTTTGAGATA
genomic: CCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAGgtataaagcc ... cttcttgtagAGTTTGAGATA
EST: gi|116428899|gb|EG471491.1|EG471491
EST:     CCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAG                         AGTTTGAGATATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCC
genomic: CCCTTGAACTCAACTTAAACCGCAGCCATCTTGTTTCTCTATCCAATGAGgtataaagcc ... cttcttgtagAGTTTGAGATATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCC
EST: gi|124873104|gb|EH954749.1|EH954749
EST:     CTTGTTTCTCTATCCAATGAG                         AGTTTGAGATATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCC
genomic: CTTGTTTCTCTATCCAATGAGgtataaagcc ... cttcttgtagAGTTTGAGATATGAACTTGTGGCAACAATTACCCACCACGGATGGGATCCC