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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTCTGAGTCATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATgtaagtagcaaattttcgtatatatactgatatacacaaacaaatcatcatgctatcgttttatacccttaacttcttctttttcgataacctacacgaaactttttatacttatatattatctcttaagtcttaactatggtttatatgaatag

Basic information

species Arabidopsis thaliana
transcript AT4G29100.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831794|gb|CK121478.1|CK121478
EST:     ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT                         TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
genomic: ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATgtaagtagca ... atatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
EST: gi|86059910|gb|DR355667.1|DR355667
EST:     ATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT                         TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
genomic: ATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATgtaagtagca ... atatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
EST: gi|47832050|gb|CK121734.1|CK121734
EST:     ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACAT                         TTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG
genomic: ATCCATACTTTGGTACGACTGCCTCGGGGAATATGAGGCACCAACAACATgtaagtagca ... atatgaatagTTGCAAGGAGATAGGAGTTGCATATTTCCTGAGGACCCTGGTCAG