Sequence
atgc intronic sequence ATGC exonic sequenceGCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcactcggttacatgtttacattcgatgtttggctacgcag
Basic information
species | Arabidopsis thaliana |
transcript | AT4G28830.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT4G28830.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G113640_T03 (Zea mays), 5'ss of exon 5
GCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcactcggttacatgtttacattcgatgtttggctac--gcag
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GCGTCCATGTTGATACTGTTGTCATGAATCCTCCCTTTGGTACACGAAGGAATGGAGCAGACATGGAGTTCCTCTCTATGGCCTTGCAGgt------cagaaccggtgcttgtttgcgactagcagtttcctttggaagatgatatttgacattttaagtgcccatttg-ctactgacag
upper sequence: AT4G28830.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA01G34690.3 (Glycine max), 5'ss of exon 6
GCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcactcggttacatgtttacattcgatgtttggctacgcag
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GTCGAATTGTTGATACAGTTATAATGAATCCTCCATTTGGTACTCGGAAAAAAGGTGCAGATTTGGATTTTCTCTCCGTTGCTTTGAAGgtaagcaatagcatcaaagcttatctataaatatatgattgatgggaattctaatattaccttttgtcag-------------------
upper sequence: AT4G28830.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv11s0016g03520.t01 (Vitis vinifera), 5'ss of exon 6
GCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcac-tcggttacat---gtttacattcgatgtttggctacg-cag
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GTCAAATTGTTGATACTGTTGTAATGAATCCTCCATTTGGAACACGGAAGAAGGGGGCTGACATGGATTTTCTCGCTGTGGCTTTGAAGgtaaagat--ggtaccattttctcatttttcagatacatgcttgtgatttatatttgttctaattaatctattttcattaattggttgtgtcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19874619|gb|AU235450.1|AU235450EST: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAG GTCGCCTCAAAGGCAGNTTATTCCTTGC
genomic: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaaca ... ggctacgcagGTCGCCTCAAAGGCAGTTTATTCCTTGC
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcactcggttacatgtttacattcgatgtttggctacgcag
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA