1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcactcggttacatgtttacattcgatgtttggctacgcag
species | Arabidopsis thaliana |
transcript | AT4G28830.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAG GTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAAEST: gi|116429478|gb|EG472070.1|EG472070
genomic: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaaca ... ggctacgcagGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAA
EST: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAG GTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAAEST: gi|19874619|gb|AU235450.1|AU235450
genomic: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaaca ... ggctacgcagGTCGCCTCAAAGGCAGTTTATTCCTTGCATAAGACATCTACCAGAGAA
EST: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAG GTCGCCTCAAAGGCAGNTTATTCCTTGC
genomic: GTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaaca ... ggctacgcagGTCGCCTCAAAGGCAGTTTATTCCTTGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGATTGTGGATACGGTTGTAATGAACCCTCCATTTGGTACACGGAAGAAAGGAGCTGACATGGAGTTTCTCTCTGCGGCAATGAAGgtaaacaacagaaaagaatatctctttttactgttttctaatttcgtatcactcggttacatgtttacattcgatgtttggctacgcag
- - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA