1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAGCTTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGAAAGACCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatctaacttgtgtttttcttttttctttcagatttttaatcaatgggaaaattttgaactgttcttgctggtatcttgggattttctcctcag
species | Arabidopsis thaliana |
transcript | AT4G27040.3 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGEST: gi|116404460|gb|EG447052.1|EG447052
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGG
EST: GTGAAGCTGTGACTGAAGATGATT-TCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404485|gb|EG447077.1|EG447077
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404457|gb|EG447049.1|EG447049
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404471|gb|EG447063.1|EG447063
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404479|gb|EG447071.1|EG447071
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: ATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404489|gb|EG447081.1|EG447081
genomic: ATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404468|gb|EG447060.1|EG447060
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404480|gb|EG447072.1|EG447072
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCCGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404481|gb|EG447073.1|EG447073
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404466|gb|EG447058.1|EG447058
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404478|gb|EG447070.1|EG447070
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404474|gb|EG447066.1|EG447066
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404364|gb|EG446956.1|EG446956
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCGAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404464|gb|EG447056.1|EG447056
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAEST: gi|116404356|gb|EG446948.1|EG446948
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGA
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404487|gb|EG447079.1|EG447079
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404482|gb|EG447074.1|EG447074
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404362|gb|EG446954.1|EG446954
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTEST: gi|116404459|gb|EG447051.1|EG447051
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGG-TAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGT
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404477|gb|EG447069.1|EG447069
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404461|gb|EG447053.1|EG447053
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404467|gb|EG447059.1|EG447059
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATT-TCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404472|gb|EG447064.1|EG447064
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTCEST: gi|116404455|gb|EG447047.1|EG447047
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
EST: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAG GTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
genomic: GTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatct ... ttctcctcagGTATTGGGTAGCGGATTTGAGGTTATCACTATTGGCAAGAAAAAGCTTGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCTTGCAAGAGCTCTGCAACCATCTTCGTCAGAGAAGGAAGAAAGACCGTGAAGCTGTGACTGAAGATGATTGTCTTCGAGCTATTAGCAAGCTAAAGgtttctatctaacttgtgtttttcttttttctttcagatttttaatcaatgggaaaattttgaactgttcttgctggtatcttgggattttctcctcag
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT