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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAGGAAAGGGAGCTTTTTGACCATGTTACCTCTAACATTTCAGCTTCAGTTCATGAAGTGACTGCCTCTGGTGCTCTCGCACTTGATCTTATCGAACAGgtatcgtaaatttgtaatgtatcaatcaatgtgtatgataagtactgcttttaaaaatcttctgtgaactcttgaag

Basic information

species Arabidopsis thaliana
transcript AT4G26760.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G26760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G02180.4 (Glycine max), 5'ss of exon 6
TGAGGAAAGGGAGCTTTTTGACCATGTTACCTCTAACATTTCAGCTTCAGTTCATGAAGTGACTGCCTCTGGTGCTCTCGCACTTGATCTTATCGAACAGgtatcgtaaa---tttgtaatgtatcaatcaatgt-----gtatgataagtactgcttttaaaaatcttctgtgaactcttgaag
 |||||||||   || |||||||||||||||| ||| || |||||||| ||| ||||||| ||||   ||||||| || || || ||||| || || ||||||    | |   | || ||| ||   ||    |      ||||||||   ||| |||||       || | |    |  | |||
CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtactaaagaacttctgaaatttacagattcgagctccaagtatgatattaacttcttttt----ctttttatttgataataaag

upper sequence: AT4G26760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G10090.1 (Glycine max), 5'ss of exon 6
-----------------------------TGAGGAAAGGGAGCTTTTTGACCATGTTACCTCTAACATTTCAGCTTCAGTTCATGAAGTGACTGCCTCTGGTGCTCTCGCACTTGATCTTATCGAACAGgtatcgtaaatttgtaatgtatcaatcaatgtgtatgataagtactgcttttaaaaatcttctgtgaactcttgaag
                              |||||||||   || ||||| |||||||||| ||| || |||||||||||| ||||||| ||||   | ||||| || || || ||||| ||  | |||                                                                             
GATATGTGGAATCTAATGGATACCCCTATAGAGGAAAGGAGACTATTTGATCATGTTACCTGTAATATCTCAGCTTCAGTTGATGAAGTCACTGTTCCCGgtgcccttgctctggatctgatttagcag-----------------------------------------------------------------------------

upper sequence: AT4G26760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G46450.3 (Glycine max), 5'ss of exon 6
TGAGGAAAGGGAGCTTTTTGACCATGTTACCTCTAACATTTCAGCTTCAGTTCATGAAGTGACTGCCTCTGGTGCTCTCGCACTTGATCTTATCGAACAGgta--tcgtaaatttgtaatgta-tcaatcaatgtgtatgataagtactgcttttaaaaatcttctg--tgaactcttgaag
 |||||||||   || |||||||||||||||| ||| || |||||||| ||| ||||||| ||||   ||||||| || || || ||||| || || ||||||  |  ||||    | ||| | |  |   ||  |  |   ||||| || | ||||   | || |   |  | |  | |||
CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtaggtactaaagaacttatgaagtttacagattcgagttccaagta-tgatattaactgtttttttcctttaataataaag

upper sequence: AT4G26760.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA14G02200.1 (Glycine max), 5'ss of exon 9
TGAGGAAAGGGAGCTTTTTGACCATGTTACCTCTAACATTTCAGCTTCAGTTCATGAAGTGACTGCCTCTGGTGCTCTCGCACTTGATCTTATCGAACAGgtatcgtaaa---tttgtaatgtatcaatcaatgt-----gtatgataagtactgcttttaaaaatcttctgtgaactcttgaag
 |||||||||   || |||||||||||||||| ||| || |||||||| ||| ||||||| ||||   ||||||| || || || ||||| || || ||||||    | |   | || ||| ||   ||    |      ||||||||   ||| |||||       || | |    |  | |||
CGAGGAAAGGAGACTATTTGACCATGTTACCTGTAATATGTCAGCTTCTGTTGATGAAGTCACTGTTCCTGGTGCCCTTGCTCTGGATCTGATTGAGCAGgtactaaagaacttctgaaatttacggattcgagctccaagtatgatattaacttcttttt----ctttttatttgataataaag