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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACATCACACAGACAAGTTCAATGGTGTACCATATGGACTGTTTCTTGGACCCAAGgtaagaagtctcttgatttgtttatattcttcttaatcttcttcatgttgttggctttttttgctaatttggatttggtgattcag

Basic information

species Arabidopsis thaliana
transcript AT4G25700.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25700.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os04g48880.1 (Oryza sativa), 5'ss of exon 5
CTACATCACACAGACAAGTTCAATGGTGTACCATATGGACTGTTTCTTGGACCCAAGgta------agaagtctcttgatttg---tttatat-tcttcttaatc--ttcttcatgttgttggctttttttgctaatttggatttggtgat-tcag-----------------------
 |||| ||||| ||||||||| | || ||||| ||||| ||||||||||||||||||||        |  | || |  |||||   | ||||| |  |  | | |  | | | |    |    | |  ||| ||  |   |  ||   ||| |||                        
ATACACCACACGGACAAGTTCGAGGGCGTACCGTATGGGCTGTTTCTTGGACCCAAGgtgcgtgactggtgcctatgcatttgtcgtctatatgtgcttgtgaccagtacatgacaaagcaatcctggtttccttgtaccgtcttctcgatctcaacgtgtgtgtggtcgtgcgtgcag