Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAACCAGTTGCTTCAGGTTGCTCAGAAATGCCAGAGCACGATTTCTGAGAGTGGTTCACAGGGAGTTTCTCAGCAGGATATACAGTCAAACAGTAACATgtaagttaatccctaacactaaatttacctttgtacatccaatttggtggatgccaactattcttttatttgtatatgttctggcttttgtctctagtgctctatatcatttccggtgctaatttatgtgtcag

Basic information

species Arabidopsis thaliana
transcript AT4G25515.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G25515.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G32250.1 (Glycine max), 5'ss of exon 6
TGAACCAGTTGCTTCAGGTTGCTCAGAAATGCCAGAGCACGATTTCTGAGAGTGGTTCACAGGGAGTTTCTCAGCAGGATATACAGTCAAACAGTAACATgtaagttaatccctaacactaaatttacctttgtacatccaatttggtggatgccaactattcttttatttgtatatgttctggcttttgtctctagtgctctatatcatttccggtgctaatttatgtgtcag
| ||||| ||  ||||||| ||||| ||||||||||| || ||| |||| |||||  |  | || ||||||||||| ||  ||||  ||||||| |||||||||||||||     ||| |    ||    ||  |       | |  |   |   || |  || ||   |   |||| ||||   |  ||         |  ||||| ||  | | |                 
TCAACCAATTAGTTCAGGTAGCTCAAAAATGCCAGAGTACAATTGCTGAAAGTGGGGCTGATGGGGTTTCTCAGCAAGACTTACAAACAAACAGCAACATgtaagttaat-----acattg---ttgttctttaatgattggtgtatttagt---aaatcctccttagctgagatat-ttctctttactgc-----acaccttatatgatgcctgct-----------------

upper sequence: AT4G25515.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv16s0100g00500.t01 (Vitis vinifera), 5'ss of exon 6
TGAACCAGTTGCTTCAGGTTGCTCAGAAATGCCAGAGCACGATTTCTGAGAGTGGTTCACAGGGAGTTTCTCAGCAGGATATACAGTCAAACAGTAACATgtaagttaatccctaacactaaatttacctttgtacatccaatttggtggatgccaactattcttttatttgtatatgttctggcttttgtctctagtgctc-tatatcatttccggtgctaatttatgtgtcag
|||| |||||| | |||||||| ||||||||||| ||||| ||| |||| ||||| ||  | ||  |||||||||||||  ||||  |||| || ||||||| |||||         | |  |   |  | || || |||  ||   |||     |  | |||| ||||  |  ||   |    |  || ||||  ||||      |   | |                      
TGAATCAGTTGGTGCAGGTTGCACAGAAATGCCAAAGCACAATTGCTGAAAGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATgtgagtta---------aatggagcaatgtctgaac-tccttttctttggcaaatagatgttctgttatcagcctaacctt---cccttctctcctgtgcctgcgcacagtgt----------------------