1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' |
GTGCTGATGCTGTGGAATTCATCATTTCCCATTCAGAGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaagaatatatattttgtgtgaaatatatatttatcactttcatgcattgattaccgttgctaaattttacatttttgtaacctcttcttaccacttgcttttgaattttgattatcag
species | Arabidopsis thaliana |
transcript | AT4G23850.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TGGAAGAGAAGAAGATCTCTGAG TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAEST: gi|125018978|gb|EL091247.1|EL091247
genomic: TGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAG TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAEST: gi|125281992|gb|EL296077.1|EL296077
genomic: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAG TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAEST: gi|125304597|gb|EL318682.1|EL318682
genomic: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAG TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAAEST: gi|125210271|gb|EL225225.1|EL225225
genomic: AGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
EST: AGAAGAAGATCTCTGAG TTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
genomic: AGAAGAAGATCTCTGAGgtacagtaag ... tgattatcagTTGTTCAAGACATGCCCAAACTCGACAGAGTACATGAAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCTGATGCTGTGGAATTCATCATTTCCCATTCAGAGGTTTCAATTGTCTTTGTGGAAGAGAAGAAGATCTCTGAGgtacagtaagaatatatattttgtgtgaaatatatatttatcactttcatgcattgattaccgttgctaaattttacatttttgtaacctcttcttaccacttgcttttgaattttgattatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG