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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGTATAGTGATCTCGCTGTAGATTATTTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctctataccgagttttctattcaaacatccaaatcatatgaaacccatatttcgtctttgtttattcattcaattctgtacttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G22890.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164205545|gb|ES026056.1|ES026056
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAG
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAG
EST: gi|124744227|gb|EH835389.1|EH835389
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACA
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACA
EST: gi|125237463|gb|EL251548.1|EL251548
EST:     ACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
genomic: ACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
EST: gi|116431831|gb|EG474423.1|EG474423
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
EST: gi|124762524|gb|EH852654.1|EH852654
EST:     TTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
genomic: TTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
EST: gi|125107208|gb|EL160597.1|EL160597
EST:     ACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGTACGACATTACAGGTTTTGAGATCACATACATCATGG
genomic: ACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGG-ACGACATTACAGGTTTTGAGATCACATACATCATGG
EST: gi|125091117|gb|EL148940.1|EL148940
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCA
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCA
EST: gi|116431832|gb|EG474424.1|EG474424
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
EST: gi|86077608|gb|DR373365.1|DR373365
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
EST: gi|124972731|gb|EL046407.1|EL046407
EST:     AATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAG
genomic: AATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAG
EST: gi|125007769|gb|EL080038.1|EL080038
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         T
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcag-
EST: gi|125007769|gb|EL080038.1|EL080038
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         T
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcag-
EST: gi|86076317|gb|DR372074.1|DR372074
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
EST: gi|125026184|gb|EL098453.1|EL098453
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGG
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGG
EST: gi|124711837|gb|EH803239.1|EH803239
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACAT
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACAT
EST: gi|125204181|gb|EL219135.1|EL219135
EST:     ACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGTACGTACATTACAGGTTTTGAGATCACATACATCATG
genomic: ACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGG-ACG-ACATTACAGGTTTTGAGATCACATACATCATG
EST: gi|124891688|gb|EH970590.1|EH970590
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCA
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCA
EST: gi|125217560|gb|EL231643.1|EL231643
EST:     GTTGTTGCTCTCGGACT                         CTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
genomic: GTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCTGGACGACATTACAGGTTTTGAGATCACATACATCATGGA
EST: gi|116424112|gb|EG466704.1|EG466704
EST:     TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACT                         CTTTTTCTTCCT
genomic: TTCAAAATGTTATTGTTGAATGTTCCAGCAACCGTTGTTGCTCTCGGACTgtgagtctct ... gtacttgcagCTTTTTCTTCCT