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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAATTGGCTGGTTTTGAACAGTCTTGGAGTGGAAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCATTTGGAAgtaagcagtcctattacacggtcaagttttcgtgttgtacgtttctttgtgaacaaagataaatcatctctttgatgttcttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G22740.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125109653|gb|EL162007.1|EL162007
EST:     AAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCATTTGGAA                         GTGGTCTTGTGAA
genomic: AAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCATTTGGAAgtaagcagtc ... gttcttgcagGTGGTCTTGTGAA
EST: gi|86077542|gb|DR373299.1|DR373299
EST:     AAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCATTTGGAA                         GTGGTCTTGTGAACAGAGAGCAACCAATGTTACTTCCCTCGACTGATCCAA
genomic: AAATGCTAGAAGGCAAATGCAGTTACCCAGTCGCTCTGGTTCATTTGGAAgtaagcagtc ... gttcttgcagGTGGTCTTGTGAACAGAGAGCAACCAATGTTACTTCCCTCGACTGATCCAA