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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAGgtaggttctttgtctggtcaagcaagtttgctaaaacctttactgcttaatctataatattccctctcttatctaaaatctatattgacctattcttttggttaatcttcttcttctag

Basic information

species Arabidopsis thaliana
transcript AT4G21790.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124884797|gb|EH963699.1|EH963699
EST:     GGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAG                         TTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGA
genomic: GGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGA
EST: gi|86078543|gb|DR374300.1|DR374300
EST:     GGTACATGATAACAGCACTGT-GAGTTAGTTGGAAAGATATTTATCGCAG                         TTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
genomic: GGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
EST: gi|164034477|gb|ES097267.1|ES097267
EST:     GATATTTATCGCAG                         TTGTG-CTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
genomic: GATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
EST: gi|124975892|gb|EL049351.1|EL049351
EST:     AAAGATATTTATCGCAG                         TTGTGTCTTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
genomic: AAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTC-TTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
EST: gi|125276844|gb|EL290929.1|EL290929
EST:     AGTTAGTTGGAAAGATATTTATCGCAG                         TTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG
genomic: AGTTAGTTGGAAAGATATTTATCGCAGgtaggttctt ... cttcttctagTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAGgtaggttctttgtctggtcaagcaagtttgctaaaacctttactgcttaatctataatattccctctcttatctaaaatctatattgacctattcttttggttaatcttcttcttctag

- - - - - - - - - - - - - - - - - - - - - GTGGAG