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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCGTACACGTTCTCTAGATGTAGCAACTATCTCACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGgtatgcaaggacttctacttctttgtagtgtagtactctagaatgtagaacttgatttgcaaatgcaagtagtggctgagcttactgaattattctgttggttgtactgagagaaattcattttatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G21540.3
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21540.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 6
GTCGTACACGTTCTCTAGATGTAGCAACTATCTCACAAGGGACTACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGgtatg-caaggacttctacttctttgtagtgtagtactctagaatgtagaacttgatttgcaaatgcaagtagtggctgagcttactga-attattctgttggttgtactgagagaa------------attcattttatttcag-----------------------------------------
||| ||   |||| || ||||| || || ||||  ||||||   |||||||| || || |||||||||||||||||||||||| | |  | ||| ||  |||  |  ||   |||||| | |  |  || |   | |  || || |  |    |   ||||| || | | ||| |   ||| | ||||   | ||            |||  ||| ||||                                            
GTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAATTTTTTAGCGTCTTGATGCTTGCTTGGGgtatgaccaaaatttccaccacttgtttatgccatactcttggaactgcaagtgactgttgaactggatttttaagacaagctttctaagaatatgcctctggatttactagaataagctttctagtggatttgtttgattttgatagctctactttgccttactgacagaattttagtattccag