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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCATAAACGTTCTGTAGATGTTGCTACAATTGCACAAGGGAATACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGgtatgccagtaaattctacttctttttgctatgtccagagttcagaaagttatttgcaaatgaaagtaatacatgagcttgctgaacgtactctttgttgtattgattagtccatttatttcag

Basic information

species Arabidopsis thaliana
transcript AT4G21534.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21534.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os07g37580.2 (Oryza sativa), 5'ss of exon 5
GTCATAAACGTTCTGTAGATGTTGCTACAATTGCACAAGGGAATACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGgtatgcc----agtaaattc-tacttctttttgctatgtccagagttcagaaagttatttgcaaatgaaagtaatacatgagcttgctgaacgtactctttgttgtattgattagtccatttatttcag------------------
|||| || ||| |  | |||||| |  |  |||  || || || || |  || || ||||||||||||||| |||||||||||||    | ||  ||  | ||    |||  | | ||   |  | | |    |||   |  || | | | |        ||    |   || |||    |     |   | |  || | |    |                   
GTCACAAGCGTCCCCTTGATGTTACCTCTGTTGTGCAGGGAAAGACAAGGTTTTTTAGTGTCTTGATGCTTACTTGGGgtatgccgtgtattagcttgatgctaagcttttttctctcttaaact-acacgtctatacccccataacactgactgtcactctcagagcttgttctcccactatctatttctggggcactaagagaaaacgatttatgaactgcag

upper sequence: AT4G21534.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv00s0181g00250.t01 (Vitis vinifera), 5'ss of exon 6
GTCATAAACGTTCTGTAGATGTTGCTACAATTGCACAAGGGAATACCAAATTCTTCAGTGTCTTGATGCTTGCTTGGGgtatgccagtaaattctac---ttctttttgctatgtccagagttcagaaagttatttgcaaatgaaagtaatac-atgagcttgctgaacgtactctttgttgtattgattagtccatttatttcag------------------------------------------------------------
|||||||  ||||  | ||||| ||||| ||    |||||| | |||||||| || || |||||||||||||||||||||||| |   || ||| ||   || ||| ||| ||   |   |  | | |||| | |    ||    | |  ||  |  ||||| || |   ||  | |   || ||| | |||   |    ||  ||                                                            
GTCATAAGTGTTCACTGGATGTGGCTACCATCTTGCAAGGGGAGACCAAATTTTTTAGCGTCTTGATGCTTGCTTGGGgtatgaccaaaatttccaccacttgtttatgccatactcttggaactgcaagtgactgttgaactggatttttaagacaagctttctaagaatatgcctc--tggatttactagaataagctttctagtggatttgtttgattttgatagctctactttgccttactgacagaattttagtattccag