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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGCCTAAGCAAACACATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGACTTGAAAAATGGGGACTTCCTCCATTCCAAGACTgtaaaaattcactcatgaactctgttcaatactcctcttccttgataacatgttcatctcggtaatgagacttttataccttgtaatttgtatttgcag

Basic information

species Arabidopsis thaliana
transcript AT4G21470.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ22483 (Selaginella moellendorffii), 5'ss of exon 6
CTGCCTAAGCAAACA-CATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGACTTGAAAAATGGGGACTTCCTCCATTCCAAGACTgtaaaaattcactcatgaactctgttcaatactcctcttccttgataacatgttcatctcggtaatgagacttttataccttgtaatttgtatttgcag
 | |     |  ||  ||| | ||  ||||||| ||  |  | ||    ||  | || ||  | | ||  ||   |||||||||||||||||| |||||||||||        ||||        |  ||   | |||   | ||||   |||    ||||   |                                   
-TCCAAGGCCTCACGTCATTTGTACGCATCTGCTGACCACATTATTTCGTCCTTGCTGGATTTCAAACCAGAGCTATGGGGACTTCCTCCATTTCAAGACTgtaag-------tcat----ctcatcaaacttttctcagtcctgatcgaatggat-tctcaacag----------------------------------

upper sequence: AT4G21470.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ11705 (Selaginella moellendorffii), 5'ss of exon 6
CTGCCTAAGCAAACA-CATCTTTATACATCTGCAGATGAAGTCATCAATTCTCTACTCGACATAAGACTTGAAAAATGGGGACTTCCTCCATTCCAAGACTgtaaaaattcactcatga-actctgttcaatactcctcttccttgataacatgttcatctcggtaatgagacttttataccttgtaatttgtatttgcag
 | |     |  ||  ||| | ||  ||||||| ||  || |  |    ||  | || ||  | | ||  ||   |||||||||||||||||| |||||||||||   |   ||||| | ||| |  ||| |          | ||||   |||    ||||   |                                   
-TCCAAGGCCTCACGTCATTTGTACGCATCTGCTGACCAAATTCTTTCGTCCTTGCTGGATTTCAAACCAGAGCTATGGGGACTTCCTCCATTTCAAGACTgtaag--tcatctcatcacacttttctcagt----------cctgatcgaatggat-tctcaacag----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124986963|gb|EL059448.1|EL059448
EST:     GACATAAGACTTGAAAAATGGGGACTTCCTCCATTTCCAAGACT                         GGATAGAGAACACTTTACCAATTGATCCATGGCATATTGGAGGTCCAGTCA
genomic: GACATAAGACTTGAAAAATGGGGACTTCCTCCA-TTCCAAGACTgtaaaaattc ... gtatttgcagGGATAGAGAACACTTTACCAATTGATCCATGGCATATTGGAGGTCCAGTCA