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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGCATGTGAAGGTTCTCTAGCGTGTTCAACCTGCCATGTGATTGTTATGgtaaaactcacttgcccttacaaacactcatctgcatagaatatcatgaactgagttttaccaaatagttgaaactgtaatcgtaatag

Basic information

species Arabidopsis thaliana
transcript AT4G21090.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G21090.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os07g01930.1 (Oryza sativa), 5'ss of exon 6
GGGCATGTGAAGGTTCTCTAGCGTGTTCAACCTGCCATGTGATTGTTATGgtaaaactcacttgcccttacaaacactcatc----tgcatagaatatcatgaactga-gttttaccaaatagttgaaactgtaatcgtaatag-
| |||||||||||||| || |||||||||||||| ||||| || |||||||||      |  |  || | |      | ||     | |||   ||   |   | ||| ||   || || |||     | |  |||  |      
GAGCATGTGAAGGTTCACTTGCGTGTTCAACCTGTCATGTCATAGTTATGgtatgctctatataaccattcctttttttattatttttcatgctattgtagagattgaagtgccactaactagcc---atttcaattttgtccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125321845|gb|EL335930.1|EL335930
EST:     GGCATGTGAAGGTTCTCTAGCGTGTTCAACCTGACCATGTGATTGTTATG                         GACACCAAATAC
genomic: GGCATGTGAAGGTTCTCTAGCGTGTTCAACCTG-CCATGTGATTGTTATGgtaaaactca ... atcgtaatagGACACCAAATAC
EST: gi|19874920|gb|AU235751.1|AU235751
EST:     GGGCATGTGAAGGGTCTCTAGCGTGTTCAACCTGNCATGTGATTGTTATG                         GACACCAAATACTACAACAAACTCGAAGAACCAACAGATGAAGAGAATGAT
genomic: GGGCATGTGAAGGTTCTCTAGCGTGTTCAACCTGCCATGTGATTGTTATGgtaaaactca ... atcgtaatagGACACCAAATACTACAACAAACTCGAAGAACCAACAGATGAAGAGAATGAT