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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGAGCCGTGTTAAGTTCTTAAGTGTGCTTGACCCAACAAACCTAACCAACTACATCTCAGAGGTTCTGGATGCAGGGCTTCTTGGTCCATTGTTCAGGgtacactaactacgtagtggtttcgagaatataactgaatatctatttatcatgcagaacacatgaaggtggtaagttactgatcaatcagtattatttccag

Basic information

species Arabidopsis thaliana
transcript AT4G20400.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G20400.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: LOC_Os05g23670.1 (Oryza sativa), 5'ss of exon 9
CAAGAGCCGTGTTAAGTTCTTAAGTGTGCTTGACCCAACAAACCTAACCAACTACATCTCAGAGGTTCTGGATGCAGGGCTTCTTGGTCCATTGTTCAGGgtacactaactacgtagtggtttcgagaatataactgaatatc--tatttatcatgcagaacacatgaaggtgg--taagttactgatcaatcagtattatttccag
 ||||| || ||||  ||    ||||| || || |||||||    |  |  ||||||||| || ||||| ||||| ||||||||||| |||||||| ||||||| ||       ||   | |||  |  | |  || ||| ||   |||| ||          |||   | |    |||| ||||||   |  |  |          
TAAGAGTCGAGTTACATTTCATAGTGTACTAGATCCAACAAGGACATGCTGCTACATCTCCGAAGTTCTTGATGCTGGGCTTCTTGGACCATTGTTTAGGgtacgcttttattataaacgcttcttgttttt--ctaaatttcaggatttgtctgctttccttcattgtgctcacataagctactgaattaataacag---------