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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAGCAATGGAAGGGTACCTCTCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACTgtgagttatcaaattatgaatttgtaatagttctgtatattcttatggaactggtacttactctgttcatcgatttttcattttaccaacag

Basic information

species Arabidopsis thaliana
transcript AT4G20380.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080465|gb|DR376222.1|DR376222
EST:     TCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACT                         TCAACACCACCCTCTCAGACCCAAACCGTTGTTGTAGAAAACCCCATGTCC
genomic: TCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACTgtgagttatc ... ttaccaacagTCAACACCACCCTCTCAGACCCAAACCGTTGTTGTAGAAAACCCCATGTCC
EST: gi|125307311|gb|EL321396.1|EL321396
EST:     TCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCC-TCTACATCAACT                         TCAACACCACCCT
genomic: TCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACTgtgagttatc ... ttaccaacagTCAACACCACCCT
EST: gi|47830281|gb|CK119965.1|CK119965
EST:     TCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACT                         TCAACACCACCCTCTCAGACCCAAACCGTTGTTGTAGAAAACCCCATGTCC
genomic: TCCCAACTAACCGGCCAAATGGAACAGCTTGTCCCCCCTCTACATCAACTgtgagttatc ... ttaccaacagTCAACACCACCCTCTCAGACCCAAACCGTTGTTGTAGAAAACCCCATGTCC