1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
AAGAGACGTCTCAGGAGTTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCATgtaagctttctattttctttttcctatctagtgacagttgattcagttgctcattcctgttatttgaacttttcattgaaattttgtttgcag
species | Arabidopsis thaliana |
transcript | AT4G19420.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTACTCTTCAT GGATCAGCAAAGAACTTGCCGAGGTCATGCACATCAAGATEST: gi|86031811|gb|DR327564.1|DR327564
genomic: TTACTCTTCATgtaagctttc ... ttgtttgcagGGATCAGCAAAGAACTTGCCGAGGTCATGCACATCAAGAT
EST: CAGGAGTTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCAT GGATCAAGCAAAGAACTTGCCGAGGTCATGCACAEST: gi|116448740|gb|EG491332.1|EG491332
genomic: CAGGAGTTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCATgtaagctttc ... ttgtttgcagGGATCA-GCAAAGAACTTGCCGAGGTCATGCACA
EST: TTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCAT GGATCAGCAAAGAACTTGCCGAGGTCATGCACATCAAGATTAACTCCTGCA
genomic: TTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCATgtaagctttc ... ttgtttgcagGGATCAGCAAAGAACTTGCCGAGGTCATGCACATCAAGATTAACTCCTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGACGTCTCAGGAGTTCAATACATTAAAACATACTTCGAAGATGTTGTTACTCTTCATgtaagctttctattttctttttcctatctagtgacagttgattcagttgctcattcctgttatttgaacttttcattgaaattttgtttgcag
- - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - AAGATG