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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCGCTCAGGAGAATGAATCATCCAAACATTGTGAAGTTGAAGGAAGTAATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGgtatacttctttcctgcttgttgttaggtattttctgatacttttattcattgctctgaatctactttatgtcattctttcttgatcag

Basic information

species Arabidopsis thaliana
transcript AT4G19110.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G19110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G108829_T01 (Zea mays), 5'ss of exon 7
TCGCTCAGGAGAATGAATCATCCAAACATTGTGAAGTTGAAGGAAGTAATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGgtatacttctttcctgcttgttgttaggtattttctgatacttttattcattgctctgaatctactttatgtcattctttcttgatcag
||  |  || | ||||||||||| |||||||||||| | || || || ||||| |||||||||||  |||||||  |  | || ||||||||| |  | ||      | | |   |  |||| |         ||| |   ||||||   |  | | |    |||| ||| |  |    
TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATCCGAGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgtta-----tggatagcaaatattctactgcgtcattactg--tgctcttg-ttgaatctgaaccattgtttttctag---

upper sequence: AT4G19110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G178822_T01 (Zea mays), 5'ss of exon 8
TCGCTCAGGAGAATGAATCATCCAAACATTGTGAAGTTGAAGGAAGTAATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGgtatacttctttcctgcttgttgttaggtattttctgatacttttattcattgctctgaatct-actttatgtcattctttcttgatcag
||  |  || | ||||||||||| |||||||||||| | || || || ||| |||||||||||||  |||||||  |  | || ||||||||| |  | ||   |      |   |  |||| |     ||  |||||   | || ||||||| |     |||  || |           
TCTTTGCGGCGCATGAATCATCCTAACATTGTGAAGCTCAAAGAGGTTATCAGGGAAAATGATATATTATACTTCATAATGGAATACATGgtaaatatgttatgta-----tagcaaatattctactgcaccattattgtgttct-tgaatctgaacccttgtttttatag---------

upper sequence: AT4G19110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S479_13V6.1 (Physcomitrella patens), 5'ss of exon 4
TCGCTCAGGAGAATGAATCATCCAAACATTGTGAAGTTGAAGGAAGTAATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGgtatac----ttctttcctgcttgttgttaggtattttctgatacttttattcattgctctgaatctactttatgtcattcttt---cttgatcag--------------------------------------
|| || ||||   ||||||||||||| ||||||||||||||||| || ||| | ||||| |||   ||||  ||||| || ||||||||||||       | |||    ||     || | || || |    |     | |||  |    |   | |  || |||  |  |||      |||| |                                       
TCTCTGAGGAAGCTGAATCATCCAAATATTGTGAAGTTGAAGGAGGTTATCAGAGAAAACGATGAACTATTTTTTGTGTTCGAGTACATGgtaagtgaagtgcttcggagcacacagtgaagt-ttgtgcattggacatgttctgtttatttcgtatgtttgatgagaaccttagaatctgattaaacacatctgctaataagtttgttttttgattctcatag

upper sequence: AT4G19110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S28_184V6.2 (Physcomitrella patens), 5'ss of exon 3
TCGCTCAGGAGAATGAATCATCCAAACATTGTGAAGTTGAAGGAAGTAATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGgtatacttctttcctgcttgttgttaggtattt-tctgatacttttattcattgctctgaatctactttatgt---cattctttcttgatcag-----------------------------------
|| ||  |||   |||||||||| |||||||||||||||||||| || ||  | || ||||||    |||  ||||| || ||||||||||||  |   ||   |   ||||| |    ||   |   |||    | |   | | ||    | |     || |   || |     | ||| |                                    
TCTCTGCGGAAGCTGAATCATCCCAACATTGTGAAGTTGAAGGAGGTTATAAGAGAGAATGATGAGTTATTTTTTGTGTTCGAGTACATGgtaatccatttatttaagtgttgatctacatccgtgcaatagacatgtaggtggttcgtgctatttgggatttgagcaatagaagtggataaacacatctgatcattggtccatgttgacctgtgtag

upper sequence: AT4G19110.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: PP1S34_221V6.1 (Physcomitrella patens), 5'ss of exon 3
TCGCTCAGGAGAATGAATCATCCAAACATTGTGAAGTTGAAGGAAGTAATCCGGGAAAATGATATCCTATACTTTGTCTTTGAGTACATGgtatacttctt--tcctgcttgttgttaggtattt------------tctgatacttttattcattgctctga-----------atctactttatgtcattctttcttgatcag------------------
|| ||  | |   |||| || || ||||||||||||||||||||||| ||||| ||||| |||   || |  ||||| || ||||| |||||   ||  ||  ||  |  | |       ||| |            |  |||   | ||| |  || |  ||           | ||| | | |  || | |||  || | |                   
TCTCTGCGAAAGTTGAAGCACCCCAACATTGTGAAGTTGAAGGAAGTCATCCGAGAAAACGATGAACTTTTTTTTGTTTTCGAGTATATGgtgagctgattgctctgggctatcaactcatatctgtagaagaaatatgcgatttatatatcctctgttgagatcagattgaaaaactaatctgtaacactttttggtgttgattcgcgtatacatgtgcag