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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAAAGCAAATATGGCAGTCCTTGGTAAAGAAGCAACTGCTGCATTAGCCGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTGTGGCTATGgtatgttttacatacacacacactggatttttttgtcatatgcagattactatttaccttatcgcttattctag

Basic information

species Arabidopsis thaliana
transcript AT4G18060.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G18060.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G12810.1 (Glycine max), 5'ss of exon 6
AAAAGCAAATATGGCAGTCCTTGGTAAAGAAGCAACTGCTGCATTAGCCGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTGTGGCTATGgtatgttttacatacacacacactggattt--ttttgtcatatgcagattactatttaccttatcgcttattctag-------------------------
 |||||||| |||||||| || |||||||||||  | |||||||| || ||||||||| |||| || || ||||| ||||| || |||||||| || |||||||| |  ||| |   |     |  || |   ||  |   |  |   | ||| |||  ||  |  |||     |                          
GAAAGCAAACATGGCAGTTCTAGGTAAAGAAGCTGCAGCTGCATTGGCTGCTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATGgtatgata-acacagtaatttttttaatgtaacttaatgccaaacttgtaactgtttttctccttccttcccaaaactattgatgttttagtcttttcttt

upper sequence: AT4G18060.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G29700.2 (Glycine max), 5'ss of exon 6
AAAAGCAAATATGGCAGTCCTTGGTAAAGAAGCAACTGCTGCATTAGCCGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTGTGGCTATGgtatgttttacatacacacacactggatttttttgtcatatgcagattactatttaccttatcgcttattctag---------------------------
 |||||||| |||||||| || |||||||||||  | || ||||| || ||||||||| |||| || || ||||| ||||| || |||||||| || |||||||| |  |||   |       ||  |   ||| |   |  |   | | | |||  ||  |  | |     |                            
GAAAGCAAACATGGCAGTTCTAGGTAAAGAAGCTGCAGCAGCATTGGCTGCTGTTGAAGCACAACAGCAGAGACTTACTTTTCAAAGGCTTGTTGCCATGgtatgata-acactgattttttttgtgtacctttatgccaaacttgtaattgtttttctctttccatcccaaaattattggtgtttagtcttttcttttta

upper sequence: AT4G18060.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv10s0003g02590.t01 (Vitis vinifera), 5'ss of exon 6
AAAAGCAAATATGGCAGTCCTTGGTAAAGAAGCAACTGCTGCATTAGCCGCTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTGTGGCTATGgtatgttttacatacacacac-actggatttttttgtcatatgcagattactattt-accttatcgcttattctag------------------
 |||||||||||||||||  | |||||||||||| | |||||||| || ||||||||| |||| || || || || | ||||||||||||||| || ||||||| ||     |   | ||  | || |   |||  |     ||| ||||  | || |  || | |  | ||  |                   
GAAAGCAAATATGGCAGTTTTGGGTAAAGAAGCAGCAGCTGCATTGGCTGCTGTTGAAGCACAACAGCAAAGGCTTAGTTTCCAGAGGCTTGTTGCAATGgtatcttcactctgagctcaagattgtaagatttattttggagcatattatcagttgaggtttttgtatttttgacaaatttgtgcttttgaag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86058789|gb|DR354546.1|DR354546
EST:     CTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTGTGGCTATG                         GTTGAAGGGGAGAAGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGAC
genomic: CTGTTGAATCACAGCAACATAGACTCACTTTCCAGAGGCTTGTGGCTATGgtatgtttta ... cttattctagGTTGAAGGGGAGAAGAATTATCACTTAAGAATAGCAGCCATCCTCAGTGAC