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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAACTTCTGACAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGgtaagttctcttacaatgtaccaaaccataaaattttgcttgagagaaaaattatcttgaatcaatctggtatgactctcagctgttttgatttacag

Basic information

species Arabidopsis thaliana
transcript AT4G17270.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164207279|gb|ES175049.1|ES175049
EST:     TAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGG                         TTTTTTGCAGACTACAACTCAAAGCTTCTTGAATC
genomic: -AAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGgtaagttctc ... tgatttacagTTTTTTGCAGACTACAACTCAAAGCTTCTTGAATC
EST: gi|86088108|gb|DR383867.1|DR383867
EST:     CAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGG                         TTTTTTGCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATATTACC
genomic: CAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGgtaagttctc ... tgatttacagTTTTTTGCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATATTACC
EST: gi|116482972|gb|EG525564.1|EG525564
EST:     CAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGG                         NNNNNNNGCAGACTACAACTCAA-GCTTCTTGAATCAACTAATTATATTAC
genomic: CAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGgtaagttctc ... tgatttacagTTTTTT-GCAGACTACAACTCAAAGCTTCTTGAATCAACTAATTATATTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAACTTCTGACAAGGCACAAGTCTACAGTTGCTGAGTTTCTCATTAAGAATGAAGACTGGgtaagttctcttacaatgtaccaaaccataaaattttgcttgagagaaaaattatcttgaatcaatctggtatgactctcagctgttttgatttacag

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