1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
ATATCGGGACAAAGATGGGAAATGGAGCATATAATTCAATGGACAACGGGTTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAGgtcctctctctttgcctttcgggtctgattttaattagcattcacgatgtaatgatagttctagaggaaattgcttgtgcataaactcgggcttatggttctacatttttctcctctttcaaaacgtttcag
species | Arabidopsis thaliana |
transcript | AT4G16760.2 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GAGATCAAATGCTCATGAG GCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTEST: gi|152033860|gb|BP817910.2|BP817910
genomic: GAGATCAAATGCTCATGAGgtcctctctc ... aacgtttcagGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTT
EST: TCATGTTCGCATTCCTAGAGATCAAATGCTCATGAG GCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAAEST: gi|116424738|gb|EG467330.1|EG467330
genomic: TCATGTTCGCATTCCTAGAGATCAAATGCTCATGAGgtcctctctc ... aacgtttcagGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAA
EST: TTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAG GCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAAEST: gi|125218171|gb|EL232254.1|EL232254
genomic: TTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAGgtcctctctc ... aacgtttcagGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAA
EST: TTCCTAGAGATCAAATGCTCATGAG GCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAAEST: gi|116424736|gb|EG467328.1|EG467328
genomic: TTCCTAGAGATCAAATGCTCATGAGgtcctctctc ... aacgtttcagGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAA
EST: TTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAG GCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAA
genomic: TTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAGgtcctctctc ... aacgtttcagGCTGTCAAAAGTTACAAGAGAAGGAGAATATGTTCCATCGGATGTTCCAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATCGGGACAAAGATGGGAAATGGAGCATATAATTCAATGGACAACGGGTTTCTTATGTTTGATCATGTTCGCATTCCTAGAGATCAAATGCTCATGAGgtcctctctctttgcctttcgggtctgattttaattagcattcacgatgtaatgatagttctagaggaaattgcttgtgcataaactcgggcttatggttctacatttttctcctctttcaaaacgtttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA