Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattaggattccaatctttcttaaagcatacgaggacaataacagaacgttaatgtttcatctgttgacaaacctttcttgataagatttgattcatttctatttattatgacag

Basic information

species Arabidopsis thaliana
transcript AT4G14910.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G094255_T02 (Zea mays), 5'ss of exon 5
-------------------------------------TTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattag-------------gattccaatctttcttaaagcatacgaggacaataacagaacgttaat-------gtttcat------ctgttgacaaacctttcttga---taagat--ttgattcatttctatttattatgacag------------------------------------------------------
                                      |||| || ||||||||||| ||  ||||||| || ||||| ||||||||||||||||| ||||||                  | || |||  | || ||| ||  |  |  || | | | ||  ||| |        |||  |       | |||||   |    | | |    |||||  |||| |  | ||||||| ||||  |                                                        
CTTACAGAAAAGTTTCATTTATTCGTTTTGGTCCCAGCTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaaca-gctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag

upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G094255_T01 (Zea mays), 5'ss of exon 6
TTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtat-------------taggattccaatctttcttaaagcatacgaggacaataacagaacgttaat-------gtttcatc------tgttgacaaacctttcttga---taagat--ttgattcatttctatttattatgacag------------------------------------------------------
 |||| || ||||||||||| ||  ||||||| || ||||| ||||||||||||||||| ||||||                  | || |||  | || ||| ||  |  |  || | | | ||  ||| |        |||  |       | |||||   |    | | |    |||||  |||| |  | ||||||| ||||  |                                                        
CTGGTTGAGCACTTCTTCCAATCTGTGGTGAACACATCTGGGATGACTCTTCACATCCGTCAGgtacatattgctgtccgctcaaatcaaattctcctcaaaaca-gctggatcagtgatacaattttagtcacgggcattttgtagaatcatattgactggctgagcataaggccaagatggttgagttttctctattttttatagcgaatttgcatgaccccgtccctatcacctgatctcgctccatactgtcttttgaag

upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA20G28420.2 (Glycine max), 5'ss of exon 6
TTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattaggattccaatctttcttaaagcatacgaggacaataacagaacgttaatgtttcatctgttgacaaacctttcttgataagatttgattcatttctatttattatgacag
|||||||| || |||||||| ||  ||||||| || ||||||||||| |||||||| |  |||||||||  |     | |||  |  || ||      | || |||      || ||| |   ||   |   || | | || |  |  | |  | | | | | || |  ||        
TTGGTGGAGCATTTCTTCCAATCCCTGGTGAACACGTCTGGTATGACACTTCACATTCAGCAGgtattaatacatagaacttcat--aatcagttatagtcattaa--atttgtaaatat---attcat--gcatatcattatgaaagaaacat-actgaatgctgtagatgt------

upper sequence: AT4G14910.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0020g03430.t01 (Vitis vinifera), 5'ss of exon 6
TTGGTGGAACACTTCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattagga-----ttccaatctttcttaaagcatacgaggacaataacagaacgttaatgtttcatctgttgacaaacctttcttgataagatttgattcatttctatttattatgacag
|||||||| ||||| |||||||| |||||||||||||| || ||||| |||||||| |||||||||| | ||     | | ||  ||| ||  |||| |     ||     || ||  ||  ||||   |  |     ||||   |||  ||   ||    |||                    
TTGGTGGAGCACTTTTTCCAGTCTTTGGTGAATACTTCAGGCATGACACTTCACATTCGACAGgtataatgagagtttcctaacatttattgtagcaaatagtaactcctcca-aatattcttgttaatttagaaagaaaacacatctccattcaatggtcttc--------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124916780|gb|EH990654.1|EH990654
EST:     GGTGAATACTTCTGGTATGACTCTTCACATCCGACAG                         CTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTT
genomic: GGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattaggat ... attatgacagCTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTT
EST: gi|125117257|gb|EL166472.1|EL166472
EST:     GTGAATACTTCTGGTATGACTCTTCACATCCGACAG                         CTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTT
genomic: GTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattaggat ... attatgacagCTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTT
EST: gi|125260108|gb|EL274193.1|EL274193
EST:     TCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAG                         CTTGCTAGGTAAAAACTCGCATCACATAATAGAAGCGACCT
genomic: TCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattaggat ... attatgacagCTTGCT-GGTAAAAACTCGCATCACATAATAGAAGCGACCT
EST: gi|86058153|gb|DR353910.1|DR353910
EST:     TCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAG                         CTTGCTGGTAAAAACTCGCATCATATAATAGAAGCGACCTTTAAGGCCTTT
genomic: TCTTCCAGTCATTGGTGAATACTTCTGGTATGACTCTTCACATCCGACAGgtattaggat ... attatgacagCTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTT
EST: gi|125182171|gb|EL197839.1|EL197839
EST:     AATACTTACTGGTATGACTCTTCACATCCGACAG                         CTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGAACCTTTAAGGCCTT
genomic: AATACTT-CTGGTATGACTCTTCACATCCGACAGgtattaggat ... attatgacagCTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGA-CCTTTAAGGCCTT
EST: gi|164171106|gb|ES035212.1|ES035212
EST:     GGTATGACTCTTCACATCCGACAG                         CTTGCTGGT-AAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTT
genomic: GGTATGACTCTTCACATCCGACAGgtattaggat ... attatgacagCTTGCTGGTAAAAACTCGCATCACATAATAGAAGCGACCTTTAAGGCCTTT