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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtcctgggttttccccttttgtttgttctcttatgcaaacaatgggatatataatcaagcaagaaattctgttattttacgagaaataaattctgatattttacag

Basic information

species Arabidopsis thaliana
transcript AT4G14716.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14716.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G165998_T01 (Zea mays), 5'ss of exon 6
GCAATGCGGCTATTCGTGGGTGAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtcctgggttttccccttttgtttgttctcttatgcaaacaatgggatatataatcaagcaag-aaattctgttatttt-acgagaaataaattctgatattttacag---------------------------------
|||||||| ||||| |||||||| || || ||||||||||||||||| || || |||||||| || || |||||  ||  |||| || |    | |     ||  ||  |     |    || |    ||  ||          ||||| |   ||  ||      ||   |||| |   |    |                                 
GCAATGCGTCTATTTGTGGGTGAGCCTGTCTGGACACCATACAATCGTCCGCATGACCATCTCCCGGCTAGgtatgat--cctgcgtctgaagcctaaagctggactgctggagcattgttgtgtcccattctctctttcttggattctctcgcttccactttcgttattctctggttcctgttggctttaacaaaacggaacattcgcatggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86028651|gb|DR324404.1|DR324404
EST:     ACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATAACTTCATGGTCAATGCCTCTGCTTAGAGAGCTTC
genomic: ACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTC
EST: gi|116403021|gb|EG445613.1|EG445613
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTC
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTTC
EST: gi|125087037|gb|EL146309.1|EL146309
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCG
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCG
EST: gi|124916606|gb|EH990480.1|EH990480
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATAACTT
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATAACTT
EST: gi|125022400|gb|EL094669.1|EL094669
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGTCGATA
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATATGTCGATA
EST: gi|19741175|gb|AU226528.1|AU226528
EST:     GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAG                         GAAAGAATATGGTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTT
genomic: GAACCGGTATGGACACCATACAATCGCCCACACGACCATCTTCCTGCAAGgtacaatgtc ... tattttacagGAAAGAATAT-GTCGATAACTTCATGATCAATGCCTCGGCTTAGAGAGCTT