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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGgtacaatgttctgttttccccttttgtctcatcaaaaacttactctgcaaaagttcatccaagaaaagacacgagaaaagctgtttatggatatcgaaacggctattttacaggaaag

Basic information

species Arabidopsis thaliana
transcript AT4G14710.4
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14710.4 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G165998_T01 (Zea mays), 5'ss of exon 6
GCAATGCGGCTTTTCGTGGGTGAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGgtacaatgttctgttttcccctt----ttgtctcatcaaaaacttactctg---caaaagttcatccaagaaaagacacgagaaaagctgtttatggatatcgaaacggcta--ttttacaggaaag-------------------
|||||||| || || |||||||| || |||||||||||||||||||| || || ||||| ||||| || |||||  ||  |  || |    | |     ||         |   ||  | ||   ||     || | |  | |    | ||     |  |   |     | | |   | | |   ||| |||  |  |                   
GCAATGCGTCTATTTGTGGGTGAGCCTGTCTGGACACCATACAATCGTCCGCATGACCATCTCCCGGCTAGgtatgatcctgcgtctgaagcctaaagctggactgctggagcattgttgtgtcccattctctctttcttggattctctcgcttccactttcgttattctctggttcctgttggctttaacaaaacggaacattcgcatggtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86074670|gb|DR370427.1|DR370427
EST:     GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAG                     
genomic: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGC-----AAGgtacaatgtt ... tacagg
EST: gi|86082287|gb|DR378046.1|DR378046
EST:     GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAG                     
genomic: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGC-----AAGgtacaatgtt ... tacagg
EST: gi|86080820|gb|DR376577.1|DR376577
EST:     GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGCAAGGAAAG                     
genomic: GAACCGGTCTGGACACCATACAATCGCCCACACGACCACCTCCCTGC-----AAGgtacaatgtt ... tacagg