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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGgtaaatgttcatcttaccctagcttttccttcaaatacttccaggaagagccccagtggtacactgttcaacaaaggctttgtgttgttttactttcctg...

Basic information

species Arabidopsis thaliana
transcript AT4G14147.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G14147.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA08G11740.1 (Glycine max), 5'ss of exon 5
GTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGgtaaatgttcatctt-------accctagcttttccttcaaatacttccaggaagagccccagtggtacactgttcaacaaaggctttgtgttgttttactttcctg
||||| ||||||||||||||||||||||| || ||||||||||||||||| |||||| | |||||||| |||||||||||| ||  ||||       |  |||   |||  || ||||  |   |    ||| | | ||     |  ||  |||||    ||    |   |  |        
GTTTTGATATGCCGAAATGAGGCTGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaatctttttcttttttgtgagactaatgttttgttaaaatgatctaaaatcgagtctctgtccacaatggtgtaacaatttgttcccctaactggaa-------

upper sequence: AT4G14147.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA05G28650.1 (Glycine max), 5'ss of exon 5
GTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGgtaaatgttcatctt-------accctagcttttccttcaaatacttccaggaagagccccagtggtacactgttcaacaaaggctttgtgttgttttactttcctg
||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||| | |||||||| |||||||||||| ||  ||||       |  |||    ||  || ||||  |   |    ||| | | ||     |   |  |||||   |||    |      |        
GTTTTGATATGCCGAAATGAGGCCGAAAAATGCTTAATAGAAACATCTATCAATTCATTGCGGATAAGTCTCAAGgtaaatttttttcttttttgtgatactaatgctttgttaaaatgatctaaaattgagtctctgtccacgatgatgtaacaatttcttcccctaaccggag-------

upper sequence: AT4G14147.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv05s0029g01310.t01 (Vitis vinifera), 5'ss of exon 5
GTTTTAATATGCCGAAATGAGGCTGAAAAGTGTTTAATAGAAACATCTATAAATTCACTCCGGATAAGCCTCAAGgtaaatgttcat--cttaccctagcttttccttcaaatacttccaggaagagccccagtggtacactgttcaacaaaggctttgtgttgttttactttcctg-
||||| || || || ||||| |||||||| || || |||||||||||||| |||||||| || |||||||||||||||||   | ||  ||     | | |  | |||      |||   |   | |   ||    || |    |  |  ||   |  ||||   | |      ||  
GTTTTGATTTGTCGGAATGAAGCTGAAAAATGCTTGATAGAAACATCTATCAATTCACTGCGAATAAGCCTCAAGgtaaaacctgataactatgtttggatgcttcttatgtctcttgttgcttgtggatcaa--atatatcacttcaggaaca-tcagtgtaactgtttccatctag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125301529|gb|EL315614.1|EL315614
EST:     TCTATAAATTCACTCCGGATAAGCCTCAAG                         GTCAAGCAAGCGGATGAACTTGAAAACATACTAACCAAAAA-TTTCTCAGA
genomic: TCTATAAATTCACTCCGGATAAGCCTCAAGgtaaatgttc ... taatttgcagGTCAAGCAAGCGGATGAACTTGAAAACATACTAACCAAAAAATTTCTCAGA