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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTTTTCCGGGATGAACCAATTCAAGTACTTCCACGCATGGATCTTCATCATAGTAGTGACCATATGTTGCATTTTGCAAATCAACTACTTGAACAAGgtaataacaaatattggttgattgtcacatttcaattttttccgactaacaaatcctgttttcatctttggag

Basic information

species Arabidopsis thaliana
transcript AT4G13800.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G13800.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA11G36550.1 (Glycine max), 5'ss of exon 7
GACTTTTTCCGGGATGAACCAATTCAAGTACTTCCACGCATGGATCTTCATCATAGTAGTGACCATATGTTGCATTTTGCAAATCAACTACTTGAACAAGgtaataacaaatattggttgattgtcacatttcaattttttccga-ctaacaaatcctgttt-tcatctt-tggag------------------------
 || |||   |||| ||| |||||    |||||  |  | ||||| || |   | || ||||    ||||||| ||||||| || ||||||||||||||||||      ||| |  |    |    |  ||  || ||      | ||  ||| | | |  | |||||     |||                        
TACATTTGAAGGGACGAATCAATTTGTTTACTTTGAGACCTGGATATTTACAGTGGTTGTGATAGGATGTTGCCTTTTGCAGATTAACTACTTGAACAAGgtatgctttaatctgtgccattataaatgttcaaaattaaattaatctttcaactacgggctgtcatcccacagagtaattgtttcgtttcaatttttac