1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaattttcaatctccttttctcaatcctgacaatttcatgtgcatatctctcgtaaactcatacatgttggtgatgcag
species | Arabidopsis thaliana |
transcript | AT4G13360.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCT TTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAGEST: gi|125037783|gb|EL110052.1|EL110052
genomic: CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAG
EST: CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCT TTCTGAGGATCCTAATCAAGEST: gi|124769284|gb|EH859414.1|EH859414
genomic: CCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAG
EST: TTAAAGGAAGCCATTTTGTCAGCTAACCT TTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAGEST: gi|164028307|gb|ES198352.1|ES198352
genomic: TTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGCAACTTTATCAAAATACAGCAG
EST: AAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCT TTCTGAGGATCCTAATCAAGACATCCAAGC
genomic: AAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaatt ... ggtgatgcagTTCTGAGGATCCTAATCAAGACATCCAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCCGCGCCATCAGACGCACTGTTCGTTGGTCTTGGGACGCATTATGTACCATCTGAAAAGCTAGCTTCATTAAAGGAAGCCATTTTGTCAGCTAACCTgtacgcaattttcaatctccttttctcaatcctgacaatttcatgtgcatatctctcgtaaactcatacatgttggtgatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT