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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaagcaagaaagcctaatactccgttagttcaagctgtataagatttgtctttatcaatcttgtaactaataaaattttcgtttccatttccatagcag

Basic information

species Arabidopsis thaliana
transcript AT4G03110.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G02700.1 (Glycine max), 5'ss of exon 6
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag-----caagaaagcct---------aatactccgttagttcaagctgtataagatttgtctt-tat-caatcttgtaac----taataaaat-tttcgtttccatttccatagcag---------------------------------------------------------------
 ||  |  |     |   | | | ||||||   | |||||||||| |||||||| || || ||||||||||| || ||||||||||||||||||||||| || ||     | | || || |         ||||     ||    |    |  |    | || |||| | | ||||| |||       | | ||| | || | |||     |  ||  | |                                                               
CCAAGTTTCTAACATGCCGCAGGCTGATCCTCAACATCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttctgctataatgcattattagaataataacattttcccccttaattcagggaacttttcttctgtacaatcatgtcgtcctatgagaaattattacatttatggattaatgtctgttatttttcctgcctaacatcttgatggaggtatatgtttgaataatcattttttctcaatag

upper sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G17090.1 (Glycine max), 5'ss of exon 6
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaagca------------------agaaagcctaatactccgttagttcaagctgtataagatttgtctttatcaatcttgt-aactaataaaattttcgtttccatttccatagcag---------------------------------------------------------------------
 |   |  |         | | | ||||||   | | |||||||| |||||||| || || ||||||||||| || ||||||||||||||||||||||| || ||                    ||||  ||||  | |        | ||       ||  ||| |       |||| ||| | |  || | |  ||   || |||||    |  |                                                                      
CCGAGTTTCTAATGCGCCGCATGCTGATCCTCAACACCCCTCATTATTTGGAGCCTTGCCAATGGGTTATGTTCCTCCATATAATGGATATGGTTATCAGgttagttcttctataatgcactattagaatacctagcatttttcccccttaattcaaggaacttttcttcagtataatcatgtcatcctatgagaaatta--ttacatttatggattaatgcttgttatttttcatgcctaacatcttgatggaggcatatgtttgaataatcatgttttctcaatag

upper sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA03G36650.2 (Glycine max), 5'ss of exon 6
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag------caagaa--------agcctaatactccgttagttcaagctgtataagatttgtctttatcaatcttgtaactaataaaattttcgtttccatttccatagcag----------------------------------------------------------
 ||     |     ||    |   |||| |     | || |||||||||||||| || |||||| ||||||| || || |||||||||||||||||||| || ||      || ||         ||| |  |      ||| | |  || || |    | ||  |   |   ||||  ||  |  ||   || | |||   | |  ||   ||                                                          
CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCCATCATTGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGGTTATCAGgttagttctatcaggactattttttagctttttttcttcttaatccttgcagtctttattctgcataattatgtcttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcttaacttcttcataggatatttgtgatgctaatcattttctcttgatag

upper sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA19G39300.1 (Glycine max), 5'ss of exon 6
TCACATCGCCCGACTAGGGAACGGTGATCCAACAAATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaag--caagaaagcctaatactccg------ttagttcaagctgtataagatttgtctttatcaat-----cttgtaactaataaaattttcgtttccatttccatagcag----------------------------------------------------------
 ||     |     ||    |   |||| |     | |  ||| |||||||||| || |||||| ||||||| || || ||||||||||||| |||||| || ||  | |  | | ||| |  |  |      ||   | || |  |  |   ||| |  |    | |     |||  ||  |  ||   || | |||   | |  ||   ||                                                          
CCAAGCTTCTAATGTACCACATACTGATTCTCAGCACCTGTCAATGTTTGGAGCCTTGCCTATGAGTTATGTTCCTCCGTATAATGGATATGCTTATCAGgttagttctaacaggactattttttagcattttttctcttaatccttgcagtctttcttctgcatagttatgccttccaatcagaaaccattgcatttgtgtattaatgttagtttccatgcataagttcttgataagatatgtgtgatgctaatcattttctcttgatag

upper sequence: AT4G03110.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0104g01150.t01 (Vitis vinifera), 5'ss of exon 6
TCACATCGCCCGACTAGGGAA-CGGTGATCCA--ACAA-ATCCCTCATTGTTTGGAGCATTACCTATGGGTTATGTACCACCATATAATGGATATGGTTATCATgtaagcaagaaagcctaatactccgttagttcaagctgtataagatt-tgtctttatcaatcttgtaactaataaaattttcgtttccatttccatagcag
      |  |  | | |  ||  | |||| ||  |||  |||| ||||| |||||||| || ||| | |||||||| || ||||| ||||||||||||||||| || ||    |  |  || ||||   |    |       |||||     ||  ||   |||| |  |     ||         ||| |||| ||  ||  | 
----GGCATCTAATTTGCCAAGTGCTGATTCAGGACAGCATCCTTCATTATTTGGAGCCTTGCCTCTTGGTTATGTTCCCCCATACAATGGATATGGTTATCAGgttagtctcattgtttattactatatgcagttgtttgatataatgcaatgctttagccaatgtgttggaacatcttgggacggttaccatatc-gtaataa

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125216907|gb|EL230990.1|EL230990
EST:     TGGATATGGTTATCAT                         CCTCCTGGAACTTATGGTTACATGCTACCACCAATTCAGAACCAAGCTGCA
genomic: TGGATATGGTTATCATgtaagcaaga ... tccatagcagCCTCCTGGAACTTATGGTTACATGCTACCACCAATTCAGAACCAAGCTGCA