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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTACAATCAAAGAGTGATGGGGTCAACACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGTTCAGgtatgtaatgagtcatttttgctagcttatatatctgctgtgttgtcacctgatcattatagcaataatatgaatttactcaaattaatttttgtgagaaagagcag

Basic information

species Arabidopsis thaliana
transcript AT4G02030.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA02G01610.1 (Glycine max), 5'ss of exon 4
AGTACAATCAAAGAGTGATGGGGTCAACACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGTTCAGgtatgtaatgagtcatttttgctagcttatatatctgctgtgttgtcacctgatcattatagcaataatatgaatttactcaaattaatttttgtgagaaagagcag-------------------------------------
 || || || |  |||||  | |||||||||||||| || || || || || ||||| ||||||||||| |||||| |||||||||||||||||||||||||||   |  | ||||   || |   ||||   ||||     |  |||  | |  ||| |          ||    ||       | | | || || | ||| |                                        
TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTGCATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattagagcaatcatgcatgtttctttat---tctggcccatcatcatttcaatattgtgttcccgcattggtgatatgagttgtgagtcttctgtggaagtggtatatgactgacatactttttacctttgtcgaagagtag

upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: GLYMA10G01660.1 (Glycine max), 5'ss of exon 4
AGTACAATCAAAGAGTGATGGGGTCAACACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGTTCAGgtat---gtaatgagtcatttttgctagcttatatat-ctgctgtgttgtcacctgatcattatagcaataata-tgaatttactcaaat------taatttttgtgagaaagagcag------------------------------------
 || || || |  |||||  | |||||||||||||| || || || || || ||||| |||||||| || |||||| |||||||||||||||||||||||||||    || | |  || |  |||  | || | ||| | |   |    ||||   |  |||   |     ||| |  | ||| |   ||      | | | || || | ||| | |                                     
TGTGCAGTCGAGAAGTGACAGTGTCAACACTTCTCTATTTGACAAAAGGGAGCATATTGAGAAACTACATCGGACTTGTAATCTTCTTCGTAAAGTTCAGgtattaattattaaagcaatcatgcatgtttctttattccggctttgcatcactgaaatatttatgtttccatacttgacttagtggtatgacttctgagtcttttgtggaagtggaatatgactgacatactttttacctttgttgaaagtag

upper sequence: AT4G02030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0005g01440.t01 (Vitis vinifera), 5'ss of exon 4
AGTACAATCAAAGAGTGATGGGGTCAACACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAACTGCACCGGACTCGTAATCTTCTTCGTAAAGTTCAGgtatgtaa--tgagtcatttttgc-tagcttatatatctgctgtgttgtcacctgatcattatagcaataatatgaatttactcaaattaatttttgtgagaaagagcag
 || ||||| |  ||||||||||| || || |||||||| || || |||||||||||||||||| |||| || || || ||||||||||| |||||||||||||  ||  | | |  |   ||  |||  |   ||| |   |||| ||    ||| |||  | | || |  ||  | ||    | ||| ||   ||||           
TGTTCAATCTAGAAGTGATGGGGTTAATACCTCTCTTTTTGAGAAAAGAGAACATATAGAGAAATTGCATCGAACACGAAATCTTCTTCGGAAAGTTCAGgtattaaaatttactagtcaatgtgtagtgttgctatttctcgtgtagtggaatga-catctttgtaagagcattgacttctagagattgatcaatgtgca---------