Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACATATGAGACTCCAGATGGTTTAGTTTCCGTGCAGAGCAAAAGTGTTGTAATGACGGTGCCATCTCATGTTGCAAGTGGTCTCTTGCGCCCTCTTTCTgtaagtttctcattttgcgaactaggaatttgctcaaaattcatagattcgacaaatatgggttcttaaatcgtgtgctgcaactgttatcttctcag

Basic information

species Arabidopsis thaliana
transcript AT4G01690.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01690.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv07s0005g02540.t01 (Vitis vinifera), 5'ss of exon 6
AACATATGAGACTCCAGATGGTTTAGTTTCCGTGCAGAGCAAAAGTGTTGTAATGACGGTGCCATCTCATGTTGCAAGTGGTCTCTTGCGCCCTCTTTCTgtaagtttctcattttgcgaactag--gaatttgctcaaaattcatagattcgacaaatatgggttcttaaatcgtgtgctgcaactgttatcttctcag----
 || ||||| || ||||| || ||||||||  ||||||| | ||||||||| ||||| || ||||| |  ||||||||| |||| ||||  |||||||||||| |||||  ||| |   | || |   |  | | |  | ||  ||    ||        ||| ||| | | | |     |  ||||    | |    |     
GACTTATGAAACACCAGAAGGATTAGTTTCTCTGCAGAGTAGAAGTGTTGTGATGACTGTTCCATCCCGCGTTGCAAGTAGTCTGTTGCATCCTCTTTCTgtatgtttc--attcttgaacctggttaagatagatgtagatgtat--cctccttctgcttggcttcattagttgaagtttctaacttgattgtgaataaaatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116467597|gb|EG510189.1|EG510189
EST:     TAATGACGGTGCCATCTCATGTTGCAAGTGGTCTCTTGCGCCCTCTTTCT                         GAATCTGCTGCAAATGCACTCTCAAAACTATATTACCCACCAGTTGCAGCA
genomic: TAATGACGGTGCCATCTCATGTTGCAAGTGGTCTCTTGCGCCCTCTTTCTgtaagtttct ... atcttctcagGAATCTGCTGCAAATGCACTCTCAAAACTATATTACCCACCAGTTGCAGCA
EST: gi|124912021|gb|EH986101.1|EH986101
EST:     TGCAAGTGGTCTCTTGCGCCCTCTTTCT                         GAATCTGCTGCAAATGCACTCTCAAAACTATATTACCCACCAGTTGCAGCA
genomic: TGCAAGTGGTCTCTTGCGCCCTCTTTCTgtaagtttct ... atcttctcagGAATCTGCTGCAAATGCACTCTCAAAACTATATTACCCACCAGTTGCAGCA