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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGgtaacatcctaagctttagtttttcatgtttccttgtgcttcaagtttgtgtaaccattgtagctaattctttggggttttggttgaaataaag

Basic information

species Arabidopsis thaliana
transcript AT4G01480.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G01480.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA16G01960.1 (Glycine max), 5'ss of exon 4
GAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGgtaacatcctaagctttagtttttcatgtttccttgtgcttcaagtttgtgt-aaccattgtagctaattctttggggttttggttga--aataaag
|||||||| ||||| |||||||| || || ||| | || ||||| || |||||||||||||||||||||  ||  |    ||| | | || |  |        | | ||| | |||   |||||||| ||  |||  ||      |||   | |   | | ||
GAGCCTGTTCTTCCCGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgta-tatatt----tttggctctttagctgataaacagttgcaattctgttccaaccattg-agacaatgattaacaagtttatcttattgacacag

upper sequence: AT4G01480.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA07G05390.1 (Glycine max), 5'ss of exon 6
GAGCCTGTGCTTCCGGGTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGgtaacatcctaagctttagtttttcatgtttccttgtgcttcaagtttg--tgtaaccattgtagctaattctttggggttttggttgaaataaag
||||| || ||||| |||||||| || || ||| | || ||||| || |||||||||||||||||||||  || ||     || | | || |  |          || || |||   |  ||||||| ||   |||     |    |    |||  | | ||
GAGCCAGTTCTTCCTGGTTGTTTCCTGCGAGCCAGGGCCATTGGATTGATGCCTATGATTGACCAGgta-tattct----cttggctctttagctgataaaaaaattgaaattttgttccaaccatt-taaacaataacaagcttgtccaattgtgacacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116470399|gb|EG512991.1|EG512991
EST:     GTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATGAT
genomic: GTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGgtaacatcct ... tgaaataaagGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATGAT
EST: gi|116470397|gb|EG512989.1|EG512989
EST:     GTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAG                         GGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATGAT
genomic: GTTGTTTTCTTCGCGCCCGAGCTATTGGTTTAATGCCTATGATTGACCAGgtaacatcct ... tgaaataaagGGTGAAAAAGATGACAAGATCATTGCAGTTTGTGTTGATGAT