1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCTCGTCGCGCTGCGTTGTGTGGATCCGGACGCGAATAAGAGACCTAAAATGGGTCATATTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGACgtaagtcttataatcgtattaatgaacatttgaagtacgtggatcgtttaatttgctcacagaatatattgtagcag
species | Arabidopsis thaliana |
transcript | AT4G01330.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GGGTCATATTTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGAC GAACGACGAGCCACGAGGGAGCATGEST: gi|125218758|gb|EL232841.1|EL232841
genomic: GGGTCATA-TTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGACgtaagtctta ... attgtagcagGAACGACGAGCCACGAGGGAGCATG
EST: ACTTGTTCTATCGTGAC GAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGG
genomic: ACTTGTTCTATCGTGACgtaagtctta ... attgtagcagGAACGACGAGCCACGAGGGAGCATGCAAGCCGCGATTTTAACCAGCCACGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTCGTCGCGCTGCGTTGTGTGGATCCGGACGCGAATAAGAGACCTAAAATGGGTCATATTATACACATGCTTGAAGCTGAAGACTTGTTCTATCGTGACgtaagtcttataatcgtattaatgaacatttgaagtacgtggatcgtttaatttgctcacagaatatattgtagcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA