1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GGAAATGGAATACAATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGCGTTTTGCATGACCCTGATTTGCGGAAAATGgtatgccctgtaatctcttccaggccgctgcgattttttttccacataatgcatcatgtcagcaagcttttttataaatcttctag
species | Arabidopsis thaliana |
transcript | AT4G01040.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AGGTGGGCAAGCTTATGGCGTTTTGCATGACCCTTGATTTGCGGAAAATG GCACTGAAATTCGTAAAACAACTTGGAGACGCTCTTCACTCAACGAGCTCAEST: gi|125016277|gb|EL088546.1|EL088546
genomic: AGGTGGGC-AGCTTATGGCGTTTTGCATGACCC-TGATTTGCGGAAAATGgtatgccctg ... aatcttctagGCACTGAAATTCGTAAAACAACTTGGAGACGCTCTTCACTCAACGAGCTCA
EST: CAAGGTGGGCAGCTTATGGCGTTTTGCATGACTCTGATTTGCGGAAAATG GCACTGAAATTCGTAAAACAACTTGGAGACGCTC
genomic: CAAGGTGGGCAGCTTATGGCGTTTTGCATGACCCTGATTTGCGGAAAATGgtatgccctg ... aatcttctagGCACTGAAATTCGTAAAACAACTTGGAGACGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAATGGAATACAATGGTATCGTGTTAGAGTCTTGGTCAAGGTGGGCAGCTTATGGCGTTTTGCATGACCCTGATTTGCGGAAAATGgtatgccctgtaatctcttccaggccgctgcgattttttttccacataatgcatcatgtcagcaagcttttttataaatcttctag
- - - - - - - - - - - - - - - - - - - - - - - GCAGCT