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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATTAAGCCACAAAATCTACTGgtatagtgtgaataatttctgcttaaaggttggtaagacgtatgaaaggataattcattgattctcttatgatgtggctttcatag

Basic information

species Arabidopsis thaliana
transcript AT4G00720.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00720.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GRMZM2G109624_T01 (Zea mays), 5'ss of exon 6
ATTTGCCGTGCGCTGAACTACTTACATCGCGTGGTTGGGGTGTGTCACCGTGACATTAAGCCACAAAATCTACTGgtatagtgtgaataatttctgcttaaagg--ttggtaagacgt--atgaaaggataattcattgattctcttatgatgtggctttcatag-----------------------------------------------------------------------------------------------------
|| |||||||| ||    ||| | ||||| || || || |||||||||||||| ||||| || ||||||||||||||| |||    |||    || ||  | |   |||    |  ||   ||    ||  ||||  | ||| |||| |    |   ||| |||                                                                                                      
ATGTGCCGTGCCCTTGCTTACATCCATCGTGTTGTCGGTGTGTGTCACCGTGATATTAAACCTCAAAATCTACTGgta-agttcccatatgcacttctcgaggagtttgagtggttgttagtgttttgagtattctgttattttctttttggatcattttgatatcttgcttaatgtgtctgctaagatctttggagtattttttttgttctgttttatgctaactgatgaacatgtttcttattgcatcttgattaaccttccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125116831|gb|EL166214.1|EL166214
EST:     TGTCACCGTGACATTAAGCCACAAAATCTACTG                         GTTAATCCCCAAACTCATCAATTAAAAATATGCGATTTTTGGAAGCGCAAA
genomic: TGTCACCGTGACATTAAGCCACAAAATCTACTGgtatagtgtg ... gctttcatagGTTAATCCCCAAACTCATCAATTAAAAATATGCGATTTT-GGAAGCGCAAA
EST: gi|125244903|gb|EL258988.1|EL258988
EST:     ACATTAAGCCACAAAATCTACTG                         GTTAATCCCCAAACTCATCAATTAAAAATATGCGATTTTGGAAGCGCAAAG
genomic: ACATTAAGCCACAAAATCTACTGgtatagtgtg ... gctttcatagGTTAATCCCCAAACTCATCAATTAAAAATATGCGATTTTGGAAGCGCAAAG