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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGATGGAAAAAGTTACAGCACTAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTGgtacatcattggttttttctccaagattcatatggttgagattaagttgcacgttctgtttgttattgtatttacag

Basic information

species Arabidopsis thaliana
transcript AT4G00710.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT4G00710.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: Vv15s0046g02900.t01 (Vitis vinifera), 5'ss of exon 6
AATCCAAGACTATCTACTTTTGGCTTGATGAAGAATAGTCGGGATGGAAAAAGTTACAGCACTAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTGgtacatcattggtttt----ttctccaagattcatatggttgagattaagttgcacgttctgtttgttattgtatttacag--------------------
||||| ||||| |||   |||||| ||||||| |||||| |||||||||||||||| || || ||||| || || || |||||||| ||| |  |||||||||  |   |  | ||    |  |   |  || || |     ||  |  |||  | | |   | |||   | |  || ||                     
AATCCTAGACTCTCTTGCTTTGGCCTGATGAAAAATAGTAGGGATGGAAAAAGTTATAGTACGAATCTGGCGTTTACTCCTCCTGAGTATTTGAGAACTGgtatgtacctcttattgaaataattttaattttatgtcaaaaagtatttgttttaaggttcctatgtatatat-cttgcaattcaatttgagggaaaagtg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124855826|gb|EH940263.1|EH940263
EST:     TAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTG                         GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCT
genomic: TAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTGgtacatcatt ... gtatttacagGGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCT
EST: gi|47831461|gb|CK121145.1|CK121145
EST:     AAGTTACAGCACTAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTG                         GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTG
genomic: AAGTTACAGCACTAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTGgtacatcatt ... gtatttacagGGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTG
EST: gi|47831462|gb|CK121146.1|CK121146
EST:     AAGTTACAGCACTAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTG                         GGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTG
genomic: AAGTTACAGCACTAATCTTGCTTTCACCCCTCCTGAATATCTACGAACTGgtacatcatt ... gtatttacagGGAGAATTACTCCAGAGAGTGTAATATACAGCTTTGGCACTCTTCTGCTTG