1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTTGGAGAGAGTATGGGATCCTATTTTAGTTACTGGAGCTCCAAAGTGTATTAGTCAGTTCTTCTTAAACGCTgtaagagacccacaaaaatttgttgttttctgttctcagctcaaataaggaattcaatagtctgagacattttatcgttgctgcag
species | Arabidopsis thaliana |
transcript | AT3G61540.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TCTTCTTAAACGCT TTTGAGAGTTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCACEST: gi|86088282|gb|DR384041.1|DR384041
genomic: TCTTCTTAAACGCTgtaagagacc ... gttgctgcagTTTGAGAGTTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCAC
EST: TTTTAGTTACTGGAGCTCCAAAGTGTATTAGTCAGTTCTTCTTAAACGCT TTTGAGAGTTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCAC
genomic: TTTTAGTTACTGGAGCTCCAAAGTGTATTAGTCAGTTCTTCTTAAACGCTgtaagagacc ... gttgctgcagTTTGAGAGTTGGCATTCTTTTGATACAAATCCACTATATGCTCTTCTCCAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGAGAGAGTATGGGATCCTATTTTAGTTACTGGAGCTCCAAAGTGTATTAGTCAGTTCTTCTTAAACGCTgtaagagacccacaaaaatttgttgttttctgttctcagctcaaataaggaattcaatagtctgagacattttatcgttgctgcag
- - - - - - - - - - - - - - - - - GGAGCT