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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGGAAGGTCAAGTCACAATGGACGTTGATCTTCGATGGGGTGGTGATCCAAATATTGTTTTAGGTGTGACAGCACTTGTTGCCTCCATACCCATTCAGgttactagagagatattttagtatttgtcgtttgggttgtcgtttgtgccaatagagattgagtatctctacaaacacttgtttctggctgaaacag

Basic information

species Arabidopsis thaliana
transcript AT3G61050.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G40290.1 (Glycine max), 5'ss of exon 6
CAAGGAAGGTCAAGTCACAATGGACGTTGATCTTCGATGGGGTGGTGATCCAAATATTGTTTTAGGTGTGACAGCACTTGTTGCCTCCATACCCATTCAGgttactagagagatattttagtatttgtcgtttgggttgtcgtttgtgccaatagagattgagtatctctacaaacacttgtttctggctgaaacag
 ||  |||||||| ||| ||||||| ||||| | || |||||||||||||| ||||||||||| | |||   |||||||||||| || || || ||||||||||     ||   |     || |||     |||  ||  | ||  |      |    || |  || |  |     | | | || ||  | |     
TAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGTTGCATCAATCCCTATTCAGgtta-----gactcaccagtgtttttccatgttgaattcacattcctataggaaatttttcaaaattttgagtgttattggcttttgcttcag----

upper sequence: AT3G61050.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G45720.1 (Glycine max), 5'ss of exon 5
CAAGGAAGGTCAAGTCACAATGGACGTTGATCTTCGATGGGGTGGTGATCCAAATATTGTTTTAGGTGTGACAGCACTTGTTGCCTCCATACCCATTCAGgttactagagagatattttagtatttgtcgtt-tgggttgtcgtttgtgccaatagagattgagtatctctacaaacac--ttgtttctggctgaaacag
 ||  |||||||| ||| ||||||| ||||| | || |||||||||||||| ||||||||||| | |||   |||||||||||| || || || ||||||||||       ||      ||| ||| ||  | | |  | ||     | || |||   |||    ||   |   |   |  |||||| | ||| |     
TAACAAAGGTCAAATCATAATGGACATTGATTTCCGTTGGGGTGGTGATCCCAATATTGTTTTGGCTGTTGAAGCACTTGTTGCGTCAATCCCTATTCAGgtta-------gactcaccagtgtttttcaatgttgaatttcac--attcctataagaatttttcataatttggagtgctattgttttttgctcag----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124877388|gb|EH956825.1|EH956825
EST:     TTGCCTCCATACCCATTCAG                         TTGAAGGATCTTCAAGTTTTCACAGTTGCACGTGTTATCTTTCAACTTGCG
genomic: TTGCCTCCATACCCATTCAGgttactagag ... gctgaaacagTTGAAGGATCTTCAAGTTTTCACAGTTGCACGTGTTATCTTTCAACTTGCG
EST: gi|116380658|gb|EG423250.1|EG423250
EST:     CAAATATTGTTTTAGGTGTGACAGCACTTGTTGCCTCCATACCCATTCAG                         TTGAAGGATCTTCAAGTTTTCACAGTTGCACGTGTTATCTTTCAACTTGCG
genomic: CAAATATTGTTTTAGGTGTGACAGCACTTGTTGCCTCCATACCCATTCAGgttactagag ... gctgaaacagTTGAAGGATCTTCAAGTTTTCACAGTTGCACGTGTTATCTTTCAACTTGCG