Sequence
atgc intronic sequence ATGC exonic sequenceAAGCCTCGGCATTTTGGGCGGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGATGTTCAACAGgttttcttgatcactccttataaatctttattttagaatcaaactagaattattgtagttccaagaaaaaacttaacacttcgatctgaagtttgagaca...
Basic information
species | Arabidopsis thaliana |
transcript | AT3G59950.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT3G59950.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA18G48380.1 (Glycine max), 5'ss of exon 6
AAGCCTCGGCATTTTGGGCGGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGATGTTCAACAGgttttcttgatcactccttataaatctttattttagaatcaaactagaattattgtagttccaagaaaaaacttaacacttcgatctgaagtttgagaca-------
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-AGCCTTGGCATCATGGGCGGCAAACCAGGTGCTTCAACATACATTATTGGTGTTCAGAATGAGAAGGCATTCTACCTTGATCCCCATGATGTTCAGCAGGtacgagtgtata------aaaaaatattatttattagtcatctcaatacttttgagattgtgaaacttgtatcatatttgttatatatgaattaacttattgaatg
upper sequence: AT3G59950.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA09G38000.1 (Glycine max), 5'ss of exon 6
AAGCCTCGGCATTTTGGGCGGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGATGTTCAACAGgttttcttgatcactccttataaatctttatt-ttagaatcaa-actagaattattgtagttccaagaaaaaacttaacactt-cgatctgaagtttgagaca
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AAGCCTTGGCATCATGGGTGGCAAACCAGGTGCTTCAACATACATTATTGGTGCTCAGAATGAAAAAGCATTCTACCTTGATCCCCATGATGTTCAGCAGgtatga--gagtatacaaaattattatttattactcatctcaatacttttgagattgtgaaacttgcatcatatttgttatatatgaattaacttattgaat-Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|86084696|gb|DR380455.1|DR380455EST: GAGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGATGTTCAACAG GTAGTGACAGTCAAGAAAGAAAATCAAGGATGTTGACACATCGTCTTACCA
genomic: GAGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGATGTTCAACAGgttttcttga ... tggttggtagGTAGTGACAGTCAAGAAAGAAAATCAA-GATGTTGACACATCGTCTTACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
AAGCCTCGGCATTTTGGGCGGCAAACCAGGTGCATCAACTTACATAGTTGGAGTTCAAGAAGACAAAGGTTTCTACCTTGATCCGCATGATGTTCAACAGgttttcttgatcactccttataaatctttattttagaatcaaactagaattattgtagttccaagaaaaaacttaacacttcgatctgaagtttgagaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagaaaa