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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGGGCCTTCGGACTTGGACTTGAGAGACTTGCTATGGTTTTGTTTGACATACCTGATATACGATTTTTCTGGTCATCCGATGAACGATTCACGTCCCAGgtgattacttgggtgacaacttcaaattttaggttatgagactaatcgtctaaaaatatgaattattttctcacattaatgtatttgatgttacatgcag

Basic information

species Arabidopsis thaliana
transcript AT3G58140.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125005619|gb|EL077888.1|EL077888
EST:     ACCTGATATACGATTTTTCTGGTCATCCGAATGAACGATTCACGTCCCAG                         TTTGGAAAAGGAGAA
genomic: ACCTGATATACGATTTTTCTGGTCATCCGA-TGAACGATTCACGTCCCAGgtgattactt ... ttacatgcagTTTGGAAAAGGAGAA
EST: gi|116411244|gb|EG453836.1|EG453836
EST:     TACCTGATATACGATTTTTCTGGTCATCCGATGAACGATTCACGTCCCAG                         TTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG
genomic: TACCTGATATACGATTTTTCTGGTCATCCGATGAACGATTCACGTCCCAGgtgattactt ... ttacatgcagTTTGGAAAAGGAGAACTTGGAGTGAAATTCAAGCCATATTCAAAG