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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAAATCAAAGATGGGAAGTTTCTCGAGTTTGCGTCTGTTCACGGCAATCTATACGGAACCAGCATTGAATCCGTTGAGGTTGTAACAGATTCAGGAAAGgtaataaaaagataatatttgtaacatcaatctctttcatgccgttgatccatcaaatgatcatatattttggtgtgtatag

Basic information

species Arabidopsis thaliana
transcript AT3G57550.2
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G57550.2 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA10G21990.1 (Glycine max), 5'ss of exon 6
AGAAATCAAAGATGGGAAGTTTCTCGAGTTTGCGTCTGTTCACGGCAATCTATACGGAACCAGCATTGAATCCGTTGAGGTTGTAACAGATTCAGGAAAGgtaa-----taaaaag--ataatatttgtaacatcaatctc-tttcatgccgttgatccatcaaat----gatcatatattttggtgtgtatag--------
||| || |||||||| |||||||| |||||||| ||||| || || ||||||||||| |||||  ||||  | || ||  | ||| ||||| |||| || ||||       | | |   | ||||||  ||  | || ||  | |||||||  |  || |  ||||    |   ||  ||||   | || | |         
AGAGATTAAAGATGGAAAGTTTCTGGAGTTTGCTTCTGTCCATGGTAATCTATACGGGACCAGTGTTGAGGCTGTGGAACTGGTATCAGATGCAGGGAAAgtaagttccccataggccttgatatttagaatgttaaacttgtctcatgcc--tattctagtaaatttgtgccaatcaatttctttctgaagatgctttgct