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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAACTTTTCAACTGTACCACTGAGAGATGAATTTCTTGAAAATGCCCGCCTATTCGTCTTTGAAACCTATTGCAAAATTCATCAAAGGATTGACATGGGgtaagttctcacatttggttgtatatgtttacacataactctgctctccggattgctcaatgtttggaattttctctattccttatctttcccaacacatgaaaattgccatatccagctatttaagttgagaagaattgttgcggtcttgtggtttaactttgtactcatgtcgagcctatatttcccttgtcag

Basic information

species Arabidopsis thaliana
transcript AT3G57290.1
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: GLYMA02G33770.1 (Glycine max), 5'ss of exon 6
GAAACTTTTCAACTGTACCACTGAGAGATGAATTTCTTGAAAATGCCCGCCTATTCGTCTTTGAAACCTATTGCAAAATTCATCAAAGGATTGACATGGGgtaagttctcacatttggttgtatatgtttacacataactctgctctccggattgctcaatgtttggaattttctctattccttatctttcccaacacatgaaaattgccatatccagctatttaagttgagaagaattgttgcggtcttgtggtttaactttgtactcatgtcgagcctatatttcccttgtcag
| |||||||||||||||||||| || ||||| || |||||||||||  | |||||  |||||||||| || || | ||| || ||| |||||||||||||||| |  |     | |  |   | |||||      || ||||          | |||  ||      ||||||    ||    ||   ||    ||   ||||||   | || |  |||   |                                                                         
GCAACTTTTCAACTGTACCACTAAGGGATGAGTTCCTTGAAAATGCTAGGCTATTTATCTTTGAAACATACTGTAGAATACACCAACGGATTGACATGGGgtatgcacctt--tctaatataagatgtt-----gtagctct----------tggctttat------aatttttctgatatgctacaattttgcacctgtgaaaaacacaatgt--agcctctgt-----------------------------------------------------------------------

upper sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ05347 (Selaginella moellendorffii), 5'ss of exon 6
GAAACTTTTCAACTGTACCA-CTGAGAGATGAATTTCTTGAAAATGCCCGCCTATTCGTCTTTGAAACCTATTGCAAAATTCATCAAAGGATTGACATGGGgtaagttctcacatttggttgtatatgtttacacataactctgctctccggattgctcaatgtttggaattttctctattccttatctttcccaacacatgaaaattgccatatccagctatttaagttgagaagaattgttgcggtcttgtggtttaactttgtactcatgtcgagcctatatttcccttgtcag
 |    |      ||||| |  | || || || ||| | || || || |||||     | || || || || |||||||| ||||||||||||||||| ||||||           |||  ||    | ||  |  |||   |  | | |   |||    ||  |  |                                                                                                                                 
-ACGGCTACATTGTGTACAAGTTCAGGGACGAGTTTTTGGAGAACGCACGCCTGGCAATGTTCGAGACATACTGCAAAATCCATCAAAGGATTGACATTGGgtaaaagt--gttcctggaagtgatggcttgtaactaatgttttttttctttttgtgggatcctcag---------------------------------------------------------------------------------------------------------------------------------

upper sequence: AT3G57290.1 (Arabidopsis thaliana), 5'ss of exon 6
lower sequence: EFJ06230 (Selaginella moellendorffii), 5'ss of exon 6
GAAACTTTTCAACTGTACCA-CTGAGAGATGAATTTCTTGAAAATGCCCGCCTATTCGTCTTTGAAACCTATTGCAAAATTCATCAAAGGATTGACATGGGgtaagttctcacatttggttgtatatgtttacacataactctgctctccggattgctcaatgtttggaattttctctattccttatctttcccaacacatgaaaattgccatatccagctatttaagttgagaagaattgttgcggtcttgtggtttaactttgtactcatgtcgagcctatatttcccttgtcag
 |    |      ||||| |  | || || || ||| | || || || |||||     | || || || || |||||||| ||||||||||||||||| ||||||           |||  ||    | ||  |  |||   |  | | |   |||    ||  |  |                                                                                                                                 
-ACGGCTACATTGTGTACAAGTTCAGGGACGAGTTTTTGGAGAACGCACGCCTGGCAATGTTCGAGACATACTGCAAAATCCATCAAAGGATTGACATTGGgtaaaagt--gttcctggaagtgatggcttgtaactaatgtttgttttctttttgtgggatcctcag---------------------------------------------------------------------------------------------------------------------------------